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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.378450 (31 seq.)
>W1711169203
LVYV01000045
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
48443
48369
-
Asn
GTT
[ENA]
¡û
>W1711501363
MKRN01000095
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
22697
22623
-
Asn
GTT
[ENA]
¡û
>W1711502230
MKSM01000003
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
48290
48364
+
Asn
GTT
[ENA]
¡û
>W1711795375
MWPQ01000040
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
187048
187122
+
Asn
GTT
[ENA]
¡û
>C014952
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
1988773
1988699
-
Asn
GTT
[Ensembl]
¡û
>C015363
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
1951048
1951122
+
Asn
GTT
[Ensembl]
¡û
>w012998
AAMY01000016
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
68776
68852
+
Asn
GTT
[ENA]
¡û
>WENV180034312
FTKP01193464
[FTKP] metagenome; soil
267
341
+
Asn
GTT
[ENA]
¡û
>WENV170650865
JRYE01037989
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
439
513
+
Asn
GTT
[ENA]
¡û
>WENV170653210
JRYI01018561
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
186
112
-
Asn
GTT
[ENA]
¡û
>WENV170705956
LNAP01000701
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27717
27791
+
Asn
GTT
[ENA]
¡û
>W09102998
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
852153
852227
+
Asn
GTT
[ENA]
¡û
>W1910182835
BJNF01000027
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
36269
36343
+
Asn
GTT
[ENA]
¡û
>W1910548946
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
752975
753049
+
Asn
GTT
[ENA]
¡û
>W1810576956
QENW01000005
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
72782
72708
-
Asn
GTT
[ENA]
¡û
>W1810784368
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
422177
422103
-
Asn
GTT
[ENA]
¡û
>W2010096450
BJNF01000027
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
36269
36343
+
Asn
GTT
[ENA]
¡û
>W2010430707
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
752975
753049
+
Asn
GTT
[ENA]
¡û
>W2010607373
JABMCJ010000093
Alphaproteobacteria
Tardiphaga robiniae LMG 26467 [JABMCJ]
234709
234783
+
Asn
GTT
[ENA]
¡û
>W2011025804
NPKQ01000007
Alphaproteobacteria
Tardiphaga sp. P9-11 [NPKQ]
227770
227844
+
Asn
GTT
[ENA]
¡û
>W2011354775
RAPX01000009
Alphaproteobacteria
Tardiphaga sp. YR296 [RAPX]
276319
276393
+
Asn
GTT
[ENA]
¡û
>C211048482
CP036498
Alphaproteobacteria
Rhodopseudomonas sp. SK50-23 [CP036498]
3145169
3145243
+
Asn
GTT
-
¡û
>C211082850
CP050292
Alphaproteobacteria
Tardiphaga robiniae 581 [CP050292]
1718092
1718018
-
Asn
GTT
-
¡û
>C231044603
CP036537
Alphaproteobacteria
Rhodopseudomonas boonkerdii NS23 [CP036537]
3025291
3025365
+
Asn
GTT
-
¡û
>C231248593
CP088008
Alphaproteobacteria
Tardiphaga sp. 37S4 [CP088008]
2400769
2400843
+
Asn
GTT
-
¡û
>C231532872
CP110389
Alphaproteobacteria
Rhodopseudomonas sp. P2A-2r [CP110389]
3629824
3629898
+
Asn
GTT
-
¡û
>C241324945
CP135529
Alphaproteobacteria
Tardiphaga sp. 709 [CP135529]
328617
328543
-
Asn
GTT
-
¡û
>C241346215
CP139027
Alphaproteobacteria
Tardiphaga sp. 42S5 [CP139027]
4050779
4050705
-
Asn
GTT
-
¡û
>W1610978998
LVYV01000045
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
48443
48369
-
Asn
GTT
[ENA]
¡û
>W1710540665
FNWZ01000003
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
466511
466585
+
Asn
GTT
[ENA]
¡û
>W1710568425
FOTP01000002
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
428124
428050
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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