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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380089 (43 seq.)
>C171000440
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
1095493
1095419
-
Glu
CTC
-
¡û
>C171000752
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
1081345
1081271
-
Glu
CTC
-
¡û
>C171001376
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
961124
961198
+
Glu
CTC
-
¡û
>C171002430
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
385222
385148
-
Glu
CTC
-
¡û
>W131245600
CARH01000095
Thermotogota
Mesotoga infera PhosAc3 [CARH]
538784
538710
-
Glu
CTC
[ENA]
¡û
>WENV180014055
FPIC01038718
[FPIC] soil metagenome; Soil
22234
22308
+
Glu
CTC
[ENA]
¢þ
>WENV180095106
MTBK01049193
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
756
830
+
Glu
CTC
[ENA]
¢þ
>WENV181230750
OFEK01002965
[OFEK] activated sludge metagenome; Anaerobic digester
4342
4268
-
Glu
CTC
[ENA]
¢þ
>WENV181231937
OFEK01092502
[OFEK] activated sludge metagenome; Anaerobic digester
79
5
-
Glu
CTC
[ENA]
¢þ
>WENV181285334
OFGS01000004
[OFGS] hot springs metagenome; Water and soil
32198
32272
+
Glu
CTC
[ENA]
¢þ
>C08004972
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
723775
723849
+
Glu
CTC
[Ensembl]
¡û
>WENV170668844
LAHQ01065077
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
531
457
-
Glu
CTC
[ENA]
¢þ
>WENV170670355
LAHT01003501
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1706
1780
+
Glu
CTC
[ENA]
¢þ
>WENV170671007
LAHU01008091
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1878
1804
-
Glu
CTC
[ENA]
¢þ
>WENV170977339
MTKZ01021443
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7306
7232
-
Glu
CTC
[ENA]
¢þ
>W1910005891
AYTX01000049
Thermotogota
Mesotoga sp. Brook.08.YT.4.2.5.1 [AYTX]
14294
14220
-
Glu
CTC
[ENA]
¡û
>W1910128992
BHXD01000002
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
40332
40258
-
Glu
CTC
[ENA]
¡û
>W1910568683
JFHL01000004
Thermotogota
Mesotoga sp. BH458_6_3_2_1 [JFHL]
47854
47780
-
Glu
CTC
[ENA]
¡û
>W1910572686
JMRN01000061
Thermotogota
Mesotoga sp. SC_4PWL113PWK15 [JMRN]
1639
1565
-
Glu
CTC
[ENA]
¡û
>W1910572793
JNFM01000074
Thermotogota
Mesotoga sp. SC_NapDC [JNFM]
566
492
-
Glu
CTC
[ENA]
¡û
>W1910573517
JPGZ01000011
Thermotogota
Mesotoga sp. Brook.08.YT.4.2.5.2. [JPGZ]
12214
12140
-
Glu
CTC
[ENA]
¡û
>W1910575138
JQSC01000078
Thermotogota
Mesotoga sp. SC_NapDC2 [JQSC]
5718
5644
-
Glu
CTC
[ENA]
¡û
>W1910578221
JWIM01000009
Thermotogota
Mesotoga sp. B105.6.4 [JWIM]
2180
2106
-
Glu
CTC
[ENA]
¡û
>C151078454
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
112443
112517
+
Glu
CTC
[Ensembl]
¡û
>W10126246
AEDC01000005
Thermotogota
Mesotoga prima MesG1.Ag.4.2 [AEDC]
5126
5052
-
Glu
CTC
[ENA]
¡û
>W1511355421
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
756070
756144
+
Glu
CTC
[ENA]
¡û
>W11133507
AEDC01000005
Thermotogota
Mesotoga prima MesG1.Ag.4.2 [AEDC]
5126
5052
-
Glu
CTC
[ENA]
¡û
>C121009917
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
257185
257111
-
Glu
CTC
[Ensembl]
¡û
>C161034962
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
224049
224123
+
Glu
CTC
[Ensembl]
¡û
>W121010845
AGJO01000005
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
22007
22081
+
Glu
CTC
[ENA]
¡û
>W1610520918
JFHK01000017
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
30964
31038
+
Glu
CTC
[ENA]
¡û
>W1610520972
JGCK01000073
Thermotogota
Kosmotoga sp. DU53 [JGCK]
150504
150430
-
Glu
CTC
[ENA]
¡û
>W1610614011
LGGP01000086
Thermotogota
Mesotoga prima [LGGP]
71
-1
-
Glu
CTC
[ENA]
¡û
>W1710582870
FQUI01000005
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
52227
52153
-
Glu
CTC
[ENA]
¡û
>W1710586881
FQXN01000005
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
31279
31353
+
Glu
CTC
[ENA]
¡û
>W1710593335
FRDJ01000002
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
126327
126253
-
Glu
CTC
[ENA]
¡û
>W1710616452
JFHK01000017
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
30964
31038
+
Glu
CTC
[ENA]
¡û
>W1710617222
JGCK01000073
Thermotogota
Kosmotoga sp. DU53 [JGCK]
150504
150430
-
Glu
CTC
[ENA]
¡û
>W1710660954
JYCX01000004
Thermotogota
Thermosipho melanesiensis [JYCX]
319024
319098
+
Glu
CTC
[ENA]
¡û
>W1710661006
JYCY01000012
Thermotogota
Thermosipho melanesiensis [JYCY]
68506
68580
+
Glu
CTC
[ENA]
¡û
>W1710661140
JYDB01000012
Thermotogota
Thermosipho melanesiensis [JYDB]
68508
68582
+
Glu
CTC
[ENA]
¡û
>W1710701342
LBFC01000018
Thermotogota
Thermosipho affectus [LBFC]
233412
233338
-
Glu
CTC
[ENA]
¡û
>W1710735094
LGGP01000086
Thermotogota
Mesotoga prima [LGGP]
71
-1
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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