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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380089 (12 seq.)
>W1711585569
MNZV01000019
Zetaproteobacteria
Zetaproteobacteria bacterium CG2_30_46_52 [MNZV]
35625
35551
-
Gln
TTG
[ENA]
¡û
>WENV181162566
OEIO01000983
[OEIO] marine metagenome; sea ice
2913
2839
-
Gln
TTG
[ENA]
¡û
>WENV181322083
OFKP01004168
[OFKP] marine metagenome; sea ice
953
879
-
Gln
TTG
[ENA]
¡û
>WENV181322689
OFKT01023351
[OFKT] marine metagenome; sea ice
336
262
-
Gln
TTG
[ENA]
¡û
>WENV181323614
OFKY01018503
[OFKY] marine metagenome; sea ice
406
480
+
Gln
TTG
[ENA]
¡û
>WENV181324716
OFLH01000480
[OFLH] marine metagenome; sea ice
2195
2121
-
Gln
TTG
[ENA]
¡û
>WENV183614918
OOEA01011276
[OOEA] marine metagenome; sea ice
351
277
-
Gln
TTG
[ENA]
¡û
>WENV183617741
OOEG01077338
[OOEG] marine metagenome; sea ice
413
339
-
Gln
TTG
[ENA]
¡û
>WENV183627436
OOGL01004158
[OOGL] marine metagenome; sea ice
1443
1369
-
Gln
TTG
[ENA]
¡û
>WENV183630623
OOGU01000018
[OOGU] marine metagenome; sea ice
7759
7833
+
Gln
TTG
[ENA]
¡û
>WENV170962721
MRWF01024670
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
18645
18719
+
Gln
TTG
[ENA]
¡û
>WENV170963224
MRWG01000046
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
243289
243215
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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