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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380361 (28 seq.)
>W1711503996
MKUD01000029
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
40106
40032
-
Thr
GGT
[ENA]
¡û
>W1711769471
MVEC01000019
Bacteroidota
Spirosoma sp. 209 [MVEC]
79635
79707
+
Thr
GGT
[ENA]
¡û
>C171104392
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
6621441
6621515
+
Thr
GGT
-
¡û
>W131169824
ARFA01000026
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
86351
86425
+
Thr
GGT
[ENA]
¡û
>C181113117
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
1108104
1108176
+
Thr
GGT
-
¡û
>W09109916
ABUR01000006
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
123044
122970
-
Thr
GGT
[ENA]
¡û
>W1911497278
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
833681
833753
+
Thr
GGT
[ENA]
¡û
>W1810364361
PVTE01000002
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
28874
28802
-
Thr
GGT
[ENA]
¡û
>W1810692068
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4335851
4335923
+
Thr
GGT
[ENA]
¡û
>SRA1015499
SRR023846.85718
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
239
165
-
Thr
GGT
[SRA]
>C151068625
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
5969636
5969562
-
Thr
GGT
[Ensembl]
¡û
>W2010459321
JAAFZH010000001
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
201856
201928
+
Thr
GGT
[ENA]
¡û
>W2010468879
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
203386
203458
+
Thr
GGT
[ENA]
¡û
>W2011158182
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
833681
833753
+
Thr
GGT
[ENA]
¡û
>W2011532772
SBLB01000008
Bacteroidota
Spirosoma sp. TY50 [SBLB]
244641
244569
-
Thr
GGT
[ENA]
¡û
>W2011705619
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
81238
81310
+
Thr
GGT
[ENA]
¡û
>W2012412130
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
4335851
4335923
+
Thr
GGT
[ENA]
¡û
>W2012412208
WPIN01000024
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
60511
60583
+
Thr
GGT
[ENA]
¡û
>W2110282938
JACWZY010000006
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
272397
272469
+
Thr
GGT
[ENA]
¡û
>W2110283043
JACXAA010000012
Bacteroidota
Spirosoma validum BT704 [JACXAA]
164997
164925
-
Thr
GGT
[ENA]
¡û
>C201250742
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
1849432
1849504
+
Thr
GGT
-
¡û
>C211124446
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
5973634
5973706
+
Thr
GGT
-
¡û
>C231263208
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
5532716
5532644
-
Thr
GGT
-
¡û
>C241057077
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
7108629
7108701
+
Thr
GGT
-
¡û
>C241140708
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
205547
205475
-
Thr
GGT
-
¡û
>C241156296
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
52395
52467
+
Thr
GGT
-
¡û
>C241171831
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
1129792
1129864
+
Thr
GGT
-
¡û
>C10111784
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
5434575
5434501
-
Thr
GGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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