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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380412 (22 seq.)
>W131063606
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
829923
829997
+
Asn
GTT
[ENA]
¡û
>W1711138726
LVEG02000008
Gammaproteobacteria
Halofilum ochraceum XJ16 [LVEG]
193310
193236
-
Asn
GTT
[ENA]
¡û
>W131171439
ARGF01000046
Gammaproteobacteria
Arhodomonas aquaeolei DSM 8974 [ARGF]
68355
68429
+
Asn
GTT
[ENA]
¡û
>C010509
CP000544
Gammaproteobacteria
Halorhodospira halophila SL1 [CP000544]
614224
614298
+
Asn
GTT
[Ensembl]
¡û
>WENV170682261
LFFM01008156
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5456
5530
+
Asn
GTT
[ENA]
¡û
>WENV170683581
LFIK01016322
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
5521
5447
-
Asn
GTT
[ENA]
¡û
>WENV170701965
LKMJ01000162
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
17451
17377
-
Asn
GTT
[ENA]
¡û
>C181001650
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
592346
592420
+
Asn
GTT
-
¡û
>W09105235
AAOQ01000009
Gammaproteobacteria
Halorhodospira halophila SL1 [AAOQ]
5113
5039
-
Asn
GTT
[ENA]
¡û
>W1810586391
QFFI01000010
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
1400
1474
+
Asn
GTT
[ENA]
¡û
>W2012400745
WNXE01000019
Gammaproteobacteria
Arhodomonas sp. KWT [WNXE]
4619
4545
-
Asn
GTT
[ENA]
¡û
>C231230854
CP086615
Gammaproteobacteria
Spiribacter sp. E85 [CP086615]
1868431
1868357
-
Asn
GTT
-
¡û
>W2110748332
MBFX01000002
Gammaproteobacteria
Spiribacter salinus M7-304 [MBFX]
328364
328290
-
Asn
GTT
[ENA]
¡û
>W2110751910
NHSE01000067
Gammaproteobacteria
Halorhodospira halophila IM9620 [NHSE]
42002
41928
-
Asn
GTT
[ENA]
¡û
>W2110752271
NHSN01000009
Gammaproteobacteria
Halorhodospira halophila IM9626 [NHSN]
69815
69889
+
Asn
GTT
[ENA]
¡û
>W2110753397
NRRM01000003
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [NRRM]
64043
63969
-
Asn
GTT
[ENA]
¡û
>W2110753432
NRRN01000012
Gammaproteobacteria
Halorhodospira abdelmalekii DSM 2110 [NRRN]
15517
15443
-
Asn
GTT
[ENA]
¡û
>W2110753486
NRRO01000006
Gammaproteobacteria
Halorhodospira halophila IM 9630 [NRRO]
84684
84610
-
Asn
GTT
[ENA]
¡û
>W2110754328
NRSH01000075
Gammaproteobacteria
Halorhodospira neutriphila DSM 15116 [NRSH]
1547
1473
-
Asn
GTT
[ENA]
¡û
>C241105079
CP046046
Gammaproteobacteria
Spiribacter sp. 2438 [CP046046]
702494
702420
-
Asn
GTT
-
¡û
>C131016244
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
709797
709723
-
Asn
GTT
[Ensembl]
¡û
>W1610949747
LVEG01000004
Gammaproteobacteria
Halofilum ochraceum XJ16 [LVEG]
193310
193236
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK