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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380434 (13 seq.)
>W08003898
ABGO01000255
Planctomycetota
Gemmata obscuriglobus UQM 2246 [ABGO]
10532
10604
+
Gly
TCC
[ENA]
¡û
>W141258279
CBXA010000116
Planctomycetota
Gemmata massiliana IIL30 [CBXA]
117423
117495
+
Gly
TCC
[ENA]
¡û
>WENV170003379
AGTN01318417
[AGTN] bioreactor metagenome; poplar biomass
140
212
+
Gly
TCC
[ENA]
¡û
>WENV170713489
LNFM01032760
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4280
4352
+
Gly
TCC
[ENA]
¡û
>C181124510
CP025958
Planctomycetota
Gemmata obscuriglobus DSM 5831 [CP025958]
1553490
1553562
+
Gly
TCC
-
¡û
>W2010166798
CABFKD010000002
Planctomycetota
Gemmataceae bacterium [CABFKD]
2197806
2197734
-
Gly
TCC
[ENA]
¡û
>W2110559639
JAGKQQ010000001
Planctomycetota
Gemmata palustris G18 [JAGKQQ]
3662552
3662480
-
Gly
TCC
[ENA]
¡û
>C241043792
CP036273
Planctomycetota
Urbifossiella limnaea ETA_A1 [CP036273]
2743174
2743246
+
Gly
TCC
-
¡û
>C241065831
CP042425
Planctomycetota
Limnoglobus roseus PX52 [CP042425]
2470399
2470471
+
Gly
TCC
-
¡û
>C241070025
CP042911
Planctomycetota
Gemmata obscuriglobus DSM 5831 [CP042911]
6468384
6468312
-
Gly
TCC
-
¡û
>C241156417
CP053452
Planctomycetota
Frigoriglobus tundricola PL17 [CP053452]
7849822
7849894
+
Gly
TCC
-
¡û
>C241380017
LR593886
Planctomycetota
Gemmata massiliana [LR593886]
7042497
7042425
-
Gly
TCC
-
¡û
>C161033308
CP011271
Planctomycetota
Gemmata sp. SH-PL17 [CP011271]
2132202
2132274
+
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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