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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380507 (84 seq.)
>WENV180005499
FLRW01073009
[FLRW] metagenome; saliva
143
217
+
Arg
CCT
[ENA]
¡û
>WENV180009774
FLSC01079638
[FLSC] metagenome; saliva
43
117
+
Arg
CCT
[ENA]
¡û
>WENV180611555
OCPW01101375
[OCPW] human gut metagenome; human gut
123
197
+
Arg
CCT
[ENA]
¡û
>WENV180716046
ODFW01172501
[ODFW] human metagenome; G_DNA_Stool
219
145
-
Arg
CCT
[ENA]
¡û
>WENV180718257
ODGF01018097
[ODGF] human metagenome; G_DNA_Throat
101
27
-
Arg
CCT
[ENA]
¡û
>WENV180720402
ODGJ01041902
[ODGJ] human metagenome; G_DNA_Tongue dorsum
35
109
+
Arg
CCT
[ENA]
¡û
>WENV180767800
ODIG01000755
[ODIG] human metagenome; G_DNA_Tongue dorsum
925
999
+
Arg
CCT
[ENA]
¡û
>WENV180775118
ODIJ01238617
[ODIJ] human metagenome; G_DNA_Tongue dorsum
107
33
-
Arg
CCT
[ENA]
¡û
>WENV180787319
ODIS01003780
[ODIS] human metagenome; G_DNA_Supragingival plaque
5513
5439
-
Arg
CCT
[ENA]
¡û
>WENV180790565
ODIT01018991
[ODIT] human metagenome; G_DNA_Tongue dorsum
785
711
-
Arg
CCT
[ENA]
¡û
>WENV180805870
ODJH01000389
[ODJH] human metagenome; G_DNA_Tongue dorsum
925
999
+
Arg
CCT
[ENA]
¡û
>WENV180807278
ODJI01001163
[ODJI] human metagenome; G_DNA_Tongue dorsum
13363
13289
-
Arg
CCT
[ENA]
¡û
>WENV180821630
ODJS01027705
[ODJS] human metagenome; G_DNA_Tongue dorsum
497
571
+
Arg
CCT
[ENA]
¡û
>WENV180823761
ODJW01151668
[ODJW] human metagenome; G_DNA_Supragingival plaque
171
245
+
Arg
CCT
[ENA]
¡û
>WENV180852704
ODKW01003901
[ODKW] human metagenome; G_DNA_Tongue dorsum
925
999
+
Arg
CCT
[ENA]
¡û
>WENV180856746
ODKZ01062162
[ODKZ] human metagenome; G_DNA_Tongue dorsum
294
368
+
Arg
CCT
[ENA]
¡û
>WENV180858657
ODLC01020025
[ODLC] human metagenome; G_DNA_Tongue dorsum
925
999
+
Arg
CCT
[ENA]
¡û
>W08001987
ABEE02000017
Bacillota
Parvimonas micra ATCC 33270 [ABEE]
1518
1592
+
Arg
CCT
[ENA]
¡û
>WENV180878200
ODLV01023671
[ODLV] human metagenome; G_DNA_Tongue dorsum
814
888
+
Arg
CCT
[ENA]
¡û
>WENV180883110
ODMC01001802
[ODMC] human metagenome; G_DNA_Tongue dorsum
12006
11932
-
Arg
CCT
[ENA]
¡û
>WENV180901246
ODOJ01086647
[ODOJ] human metagenome; G_DNA_Tongue dorsum
233
159
-
Arg
CCT
[ENA]
¡û
>WENV180916987
ODTD01002808
[ODTD] human metagenome; G_DNA_Tongue dorsum
1143
1217
+
Arg
CCT
[ENA]
¡û
>WENV180930736
ODTP01000243
[ODTP] human metagenome; G_DNA_Tongue dorsum
945
1019
+
Arg
CCT
[ENA]
¡û
>WENV180939028
ODTX01012922
[ODTX] human metagenome; G_DNA_Supragingival plaque
2020
1946
-
Arg
CCT
[ENA]
¡û
>WENV180948193
ODUG01000427
[ODUG] human metagenome; G_DNA_Tongue dorsum
1094
1168
+
Arg
CCT
[ENA]
¡û
>WENV180951911
ODUH01073361
[ODUH] human metagenome; G_DNA_Subgingival plaque
24
98
+
Arg
CCT
[ENA]
¡û
>WENV180954055
ODUJ01000196
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1114
1188
+
Arg
CCT
[ENA]
¡û
>WENV180959625
ODUM01001775
[ODUM] human metagenome; G_DNA_Tongue dorsum
9904
9830
-
Arg
CCT
[ENA]
¡û
>WENV180964974
ODUO01068165
[ODUO] human metagenome; G_DNA_Supragingival plaque
238
164
-
Arg
CCT
[ENA]
¡û
>WENV180976433
ODUY01107174
[ODUY] human metagenome; G_DNA_Supragingival plaque
232
158
-
Arg
CCT
[ENA]
¡û
>WENV180978167
ODUZ01022522
[ODUZ] human metagenome; G_DNA_Tongue dorsum
749
823
+
Arg
CCT
[ENA]
¡û
>WENV180986115
ODVJ01046468
[ODVJ] human metagenome; G_DNA_Tongue dorsum
540
614
+
Arg
CCT
[ENA]
¡û
>WENV180990064
ODVN01000333
[ODVN] human metagenome; G_DNA_Tongue dorsum
1100
1174
+
Arg
CCT
[ENA]
¡û
>WENV181009678
ODWE01145648
[ODWE] human metagenome; G_DNA_Supragingival plaque
134
60
-
Arg
CCT
[ENA]
¡û
>WENV181020284
ODWU01100937
[ODWU] human metagenome; G_DNA_Supragingival plaque
142
68
-
Arg
CCT
[ENA]
¡û
>WENV181039931
ODXQ01077682
[ODXQ] human metagenome; G_DNA_Tongue dorsum
471
397
-
Arg
CCT
[ENA]
¡û
>WENV181042058
ODXS01138399
[ODXS] human metagenome; G_DNA_Tongue dorsum
260
186
-
Arg
CCT
[ENA]
¡û
>WENV181052765
ODYG01024065
[ODYG] human metagenome; G_DNA_Tongue dorsum
338
264
-
Arg
CCT
[ENA]
¡û
>WENV181059572
ODYM01002723
[ODYM] human metagenome; G_DNA_Tongue dorsum
925
999
+
Arg
CCT
[ENA]
¡û
>WENV181069381
ODZZ01037012
[ODZZ] human metagenome; G_DNA_Tongue dorsum
594
668
+
Arg
CCT
[ENA]
¡û
>WENV181074891
OEAO01038042
[OEAO] human metagenome; G_DNA_Tongue dorsum
738
812
+
Arg
CCT
[ENA]
¡û
>WENV181084474
OEAV01268585
[OEAV] human metagenome; G_DNA_Supragingival plaque
37
111
+
Arg
CCT
[ENA]
¡û
>WENV181086745
OEAY01002703
[OEAY] human metagenome; G_DNA_Tongue dorsum
6410
6336
-
Arg
CCT
[ENA]
¡û
>WENV181097933
OECA01046435
[OECA] human metagenome; G_DNA_Tongue dorsum
144
218
+
Arg
CCT
[ENA]
¡û
>WENV181109200
OEEJ01014161
[OEEJ] human metagenome; G_DNA_Tongue dorsum
284
210
-
Arg
CCT
[ENA]
¡û
>WENV181114230
OEEO01000251
[OEEO] human metagenome; G_DNA_Supragingival plaque
1141
1215
+
Arg
CCT
[ENA]
¡û
>WENV181138939
OEGN01001731
[OEGN] human metagenome; G_DNA_Tongue dorsum
837
911
+
Arg
CCT
[ENA]
¡û
>WENV181141973
OEGT01043306
[OEGT] human metagenome; G_DNA_Throat
89
15
-
Arg
CCT
[ENA]
¡û
>WENV181147108
OEHQ01141879
[OEHQ] human metagenome; G_DNA_Supragingival plaque
185
111
-
Arg
CCT
[ENA]
¡û
>WENV181153344
OEIA01057476
[OEIA] human metagenome; G_DNA_Supragingival plaque
188
114
-
Arg
CCT
[ENA]
¡û
>WENV181159110
OEIH01048778
[OEIH] human metagenome; G_DNA_Supragingival plaque
109
35
-
Arg
CCT
[ENA]
¡û
>WENV181462735
OGEN01032681
[OGEN] metagenome; Human gut stool
642
716
+
Arg
CCT
[ENA]
¡û
>W141168113
AXUQ01000011
Bacillota
Parvimonas micra A293 [AXUQ]
111581
111507
-
Arg
CCT
[ENA]
¡û
>WENV181865563
OGWU01041138
[OGWU] human gut metagenome; faeces
710
784
+
Arg
CCT
[ENA]
¡û
>WENV181874572
OGXA01036603
[OGXA] human gut metagenome; faeces
303
229
-
Arg
CCT
[ENA]
¡û
>WENV181877683
OGXD01039581
[OGXD] human gut metagenome; faeces
243
169
-
Arg
CCT
[ENA]
¡û
>WENV181895888
OGXR01051062
[OGXR] human gut metagenome; faeces
507
433
-
Arg
CCT
[ENA]
¡û
>WENV181903362
OGXX01001012
[OGXX] human gut metagenome; faeces
864
938
+
Arg
CCT
[ENA]
¡û
>WENV181928687
OGYO01002826
[OGYO] human gut metagenome; faeces
7573
7499
-
Arg
CCT
[ENA]
¡û
>WENV181932012
OGYQ01028050
[OGYQ] human gut metagenome; faeces
179
105
-
Arg
CCT
[ENA]
¡û
>WENV181953476
OGZI01008764
[OGZI] human gut metagenome; faeces
3636
3562
-
Arg
CCT
[ENA]
¡û
>WENV181977290
OHAD01041953
[OHAD] human gut metagenome; faeces
298
224
-
Arg
CCT
[ENA]
¡û
>WENV181979887
OHAF01004179
[OHAF] human gut metagenome; faeces
2369
2443
+
Arg
CCT
[ENA]
¡û
>WENV181997985
OHAU01011094
[OHAU] human gut metagenome; faeces
865
939
+
Arg
CCT
[ENA]
¡û
>WENV182873150
OKRW01000044
[OKRW] human gut metagenome; faeces
106841
106767
-
Arg
CCT
[ENA]
¡û
>WENV182880669
OKSA01000967
[OKSA] human gut metagenome; faeces
1446
1520
+
Arg
CCT
[ENA]
¡û
>WENV182892298
OKSH01059362
[OKSH] human gut metagenome; faeces
143
69
-
Arg
CCT
[ENA]
¡û
>WENV183223500
OLQM01027582
[OLQM] human gut metagenome; faeces
955
1029
+
Arg
CCT
[ENA]
¡û
>WENV183253218
OLRI01034822
[OLRI] human gut metagenome; faeces
706
632
-
Arg
CCT
[ENA]
¡û
>C191083849
CP031971
Bacillota
Parvimonas micra KCOM 1037 [CP031971]
1221230
1221156
-
Arg
CCT
-
¡û
>C191211266
LR134472
Bacillota
Parvimonas micra NCTC11808 [LR134472]
1156264
1156338
+
Arg
CCT
-
¡û
>C151059090
CP009761
Bacillota
Parvimonas micra KCOM 1535; ChDC B708 [CP009761]
1340033
1339959
-
Arg
CCT
[Ensembl]
¡û
>W2010082179
BHYQ01000005
Bacillota
Parvimonas micra 13-07-26 [BHYQ]
1342
1416
+
Arg
CCT
[ENA]
¡û
>W2010262518
CABKNC020000002
Bacillota
Parvimonas micra [CABKNC]
1518
1592
+
Arg
CCT
[ENA]
¡û
>W2011449445
RKIS01000001
Bacillota
Parvimonas micra FDAARGOS_569 [RKIS]
488968
489042
+
Arg
CCT
[ENA]
¡û
>C231436480
CP101407
Bacillota
Parvimonas micra PM79KC-G-1 [CP101407]
341144
341218
+
Arg
CCT
-
¡û
>C231436521
CP101408
Bacillota
Parvimonas micra PM79KC-AC-2 [CP101408]
337407
337481
+
Arg
CCT
-
¡û
>C231436562
CP101409
Bacillota
Parvimonas micra PM89KC-G-1 [CP101409]
317114
317188
+
Arg
CCT
-
¡û
>C231436603
CP101410
Bacillota
Parvimonas micra PM89KC-G-2 [CP101410]
317114
317188
+
Arg
CCT
-
¡û
>C231436644
CP101411
Bacillota
Parvimonas micra PM89KC-AC-1 [CP101411]
322268
322342
+
Arg
CCT
-
¡û
>C231436685
CP101412
Bacillota
Parvimonas micra PM102KC-G-1 [CP101412]
333349
333423
+
Arg
CCT
-
¡û
>C231436726
CP101413
Bacillota
Parvimonas micra PM114KC-AC-1 [CP101413]
319871
319945
+
Arg
CCT
-
¡û
>W11163915
AFII01000001
Bacillota
Parvimonas sp. oral taxon 110 oral taxon 110 str. F0139 [AFII]
697344
697270
-
Arg
CCT
[ENA]
¡û
>W11174520
AFUS01000004
Bacillota
Parvimonas sp. oral taxon 393 oral taxon 393 str. F0440 [AFUS]
296095
296169
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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