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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380824 (31 seq.)
>C171046482
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
1310566
1310640
+
Val
CAC
-
¡û
>WENV180019802
FTCO01001020
[FTCO] metagenome; soil
6618
6691
+
Val
CAC
[ENA]
¡û
>WENV180693824
OCZS011631464
[OCZS] soil metagenome; soil
161
88
-
Val
CAC
[ENA]
¡û
>C08008943
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
6315699
6315625
-
Val
CAC
[Ensembl]
¡û
>WENV170564687
CZKU01000537
[CZKU] soil metagenome genome assembly CiPEHR-AK-2010-FBin.27, contig:; soil
46573
46647
+
Val
CAC
[ENA]
¡û
>C181012512
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
7653310
7653237
-
Val
CAC
-
¡û
>C191010032
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
5546769
5546696
-
Val
CAC
-
¡û
>C191010092
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
7996797
7996724
-
Val
CAC
-
¡û
>W2011690782
SSMQ01000020
Myxococcota
Polyangium fumosum DSM 14668 [SSMQ]
32581
32656
+
Val
CAC
[ENA]
¡û
>W2011690830
SSMR01000001
Myxococcota
Polyangium sp. SDU3-1 [SSMR]
1062166
1062239
+
Val
CAC
[ENA]
¡û
>W2012350984
WJIE01000001
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
969106
969031
-
Val
CAC
[ENA]
¡û
>C231161601
CP079217
Myxococcota
Polyangium aurulentum SDU3-1 [CP079217]
7983142
7983215
+
Val
CAC
-
¡û
>C231448195
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
7952981
7952908
-
Val
CAC
-
¡û
>C131010780
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
7812515
7812441
-
Val
CAC
[Ensembl]
¡û
>W1610520407
JELX01004021
Myxococcota
Sorangium cellulosum [JELX]
996
922
-
Val
CAC
[ENA]
¡û
>W1610520436
JELY01001888
Myxococcota
Sorangium cellulosum [JELY]
3946
4020
+
Val
CAC
[ENA]
¡û
>W1610520482
JELZ01001181
Myxococcota
Sorangium cellulosum [JELZ]
1043
969
-
Val
CAC
[ENA]
¡û
>W1610520539
JEMA01000762
Myxococcota
Sorangium cellulosum [JEMA]
3524
3450
-
Val
CAC
[ENA]
¡û
>W1610520599
JEMB01002813
Myxococcota
Sorangium cellulosum [JEMB]
1275
1201
-
Val
CAC
[ENA]
¡û
>W1610520649
JEMC01003277
Myxococcota
Sorangium cellulosum [JEMC]
938
864
-
Val
CAC
[ENA]
¡û
>W1610520684
JEMD01001612
Myxococcota
Sorangium cellulosum [JEMD]
14722
14796
+
Val
CAC
[ENA]
¡û
>W1610520753
JEME01002749
Myxococcota
Sorangium cellulosum [JEME]
1451
1377
-
Val
CAC
[ENA]
¡û
>WENV077537
AAFX01056384
Soil microbial communities from Minnesota Farm
682
756
+
Val
CAC
[ENA]
>W1710615885
JELX01004021
Myxococcota
Sorangium cellulosum [JELX]
996
922
-
Val
CAC
[ENA]
¡û
>W1710615914
JELY01001888
Myxococcota
Sorangium cellulosum [JELY]
3946
4020
+
Val
CAC
[ENA]
¡û
>W1710615960
JELZ01001181
Myxococcota
Sorangium cellulosum [JELZ]
1043
969
-
Val
CAC
[ENA]
¡û
>W1710616017
JEMA01000762
Myxococcota
Sorangium cellulosum [JEMA]
3524
3450
-
Val
CAC
[ENA]
¡û
>W1710616077
JEMB01002813
Myxococcota
Sorangium cellulosum [JEMB]
1275
1201
-
Val
CAC
[ENA]
¡û
>W1710616127
JEMC01003277
Myxococcota
Sorangium cellulosum [JEMC]
938
864
-
Val
CAC
[ENA]
¡û
>W1710616162
JEMD01001612
Myxococcota
Sorangium cellulosum [JEMD]
14722
14796
+
Val
CAC
[ENA]
¡û
>W1710616231
JEME01002749
Myxococcota
Sorangium cellulosum [JEME]
1451
1377
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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