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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380903 (91 seq.)
>W131205838
ATFD01000003
Spirochaetota
Treponema socranskii subsp. paredis ATCC 35535 [ATFD]
167824
167751
-
Glu
TTC
[ENA]
¡û
>W131217433
ATWV01000001
Spirochaetota
Treponema bryantii NK4A124 [ATWV]
43033
42960
-
Glu
TTC
[ENA]
¡û
>WENV180003101
FLNY01004876
[FLNY] bioreactor metagenome; Moose rumen
15554
15481
-
Glu
TTC
[ENA]
¡û
>WENV180005984
FLRX01075367
[FLRX] metagenome; saliva
1
74
+
Glu
TTC
[ENA]
¡û
>WENV180229078
OBCH01000098
[OBCH] human gut metagenome; human gut
9990
10063
+
Glu
TTC
[ENA]
¡û
>WENV180230658
OBCM01000003
[OBCM] human gut metagenome; human gut
51227
51300
+
Glu
TTC
[ENA]
¡û
>WENV180230709
OBCM01000401
[OBCM] human gut metagenome; human gut
4202
4129
-
Glu
TTC
[ENA]
¡û
>WENV180404255
OBSA01000001
[OBSA] human gut metagenome; ENVO:feces
167332
167259
-
Glu
TTC
[ENA]
¡û
>WENV180404260
OBSA01000004
[OBSA] human gut metagenome; ENVO:feces
125479
125552
+
Glu
TTC
[ENA]
¡û
>WENV180561577
OCKZ01000003
[OCKZ] human gut metagenome; human gut
98505
98578
+
Glu
TTC
[ENA]
¡û
>WENV180561584
OCKZ01000009
[OCKZ] human gut metagenome; human gut
24448
24521
+
Glu
TTC
[ENA]
¡û
>WENV180597372
OCPL01000054
[OCPL] human gut metagenome; ENVO:feces
76
3
-
Glu
TTC
[ENA]
¡û
>WENV180653969
OCVV010258783
[OCVV] gut metagenome; gut
78
5
-
Glu
TTC
[ENA]
¡û
>WENV180653970
OCVV010258783
[OCVV] gut metagenome; gut
78
5
-
Glu
TTC
[ENA]
¡û
>WENV180657257
OCVV010643487
[OCVV] gut metagenome; gut
965
892
-
Glu
TTC
[ENA]
¡û
>WENV180657258
OCVV010643487
[OCVV] gut metagenome; gut
965
892
-
Glu
TTC
[ENA]
¡û
>WENV180670125
OCVV011293978
[OCVV] gut metagenome; gut
664
591
-
Glu
TTC
[ENA]
¡û
>WENV180670126
OCVV011293978
[OCVV] gut metagenome; gut
664
591
-
Glu
TTC
[ENA]
¡û
>WENV180670875
OCVV011307193
[OCVV] gut metagenome; gut
6116
6043
-
Glu
TTC
[ENA]
¡û
>WENV180670876
OCVV011307193
[OCVV] gut metagenome; gut
6116
6043
-
Glu
TTC
[ENA]
¡û
>WENV180672989
OCVV011335520
[OCVV] gut metagenome; gut
10236
10164
-
Glu
TTC
[ENA]
¡û
>WENV180672990
OCVV011335520
[OCVV] gut metagenome; gut
10236
10164
-
Glu
TTC
[ENA]
¡û
>WENV180679167
OCVV012188653
[OCVV] gut metagenome; gut
45
118
+
Glu
TTC
[ENA]
¡û
>WENV180679168
OCVV012188653
[OCVV] gut metagenome; gut
45
118
+
Glu
TTC
[ENA]
¡û
>WENV180679859
OCVV012389659
[OCVV] gut metagenome; gut
95
22
-
Glu
TTC
[ENA]
¡û
>WENV180679860
OCVV012389659
[OCVV] gut metagenome; gut
95
22
-
Glu
TTC
[ENA]
¡û
>WENV180721651
ODGL01004519
[ODGL] human metagenome; G_DNA_Subgingival plaque
210
283
+
Glu
TTC
[ENA]
¡û
>WENV180727909
ODGU01015680
[ODGU] human metagenome; G_DNA_Supragingival plaque
512
439
-
Glu
TTC
[ENA]
¡û
>WENV180728795
ODGU01097620
[ODGU] human metagenome; G_DNA_Supragingival plaque
45
118
+
Glu
TTC
[ENA]
¡û
>WENV180734761
ODGZ01022064
[ODGZ] human metagenome; G_DNA_Supragingival plaque
277
350
+
Glu
TTC
[ENA]
¡û
>WENV180750316
ODHS01001339
[ODHS] human metagenome; G_DNA_Supragingival plaque
4570
4497
-
Glu
TTC
[ENA]
¡û
>WENV180787904
ODIS01020842
[ODIS] human metagenome; G_DNA_Supragingival plaque
105
179
+
Glu
TTC
[ENA]
¡û
>WENV180788313
ODIS01046631
[ODIS] human metagenome; G_DNA_Supragingival plaque
298
371
+
Glu
TTC
[ENA]
¡û
>WENV180797376
ODJB01052298
[ODJB] human metagenome; G_DNA_Supragingival plaque
80
7
-
Glu
TTC
[ENA]
¡û
>WENV180805141
ODJG01071334
[ODJG] human metagenome; G_DNA_Supragingival plaque
282
355
+
Glu
TTC
[ENA]
¡û
>WENV180809960
ODJK01078826
[ODJK] human metagenome; G_DNA_Subgingival plaque
344
417
+
Glu
TTC
[ENA]
¡û
>WENV180823764
ODJW01155930
[ODJW] human metagenome; G_DNA_Supragingival plaque
258
185
-
Glu
TTC
[ENA]
¡û
>WENV180844522
ODKN01168933
[ODKN] human metagenome; G_DNA_Supragingival plaque
58
131
+
Glu
TTC
[ENA]
¡û
>WENV180881115
ODLZ01161133
[ODLZ] human metagenome; G_DNA_Tongue dorsum
247
174
-
Glu
TTC
[ENA]
¡û
>WENV180889717
ODMN01114675
[ODMN] human metagenome; G_DNA_Supragingival plaque
295
222
-
Glu
TTC
[ENA]
¡û
>WENV180923347
ODTJ01129147
[ODTJ] human metagenome; G_DNA_Supragingival plaque
108
181
+
Glu
TTC
[ENA]
¡û
>W141091791
AUZJ01000002
Spirochaetota
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 [AUZJ]
39640
39567
-
Glu
TTC
[ENA]
¡û
>WENV180939364
ODTX01030477
[ODTX] human metagenome; G_DNA_Supragingival plaque
1027
1100
+
Glu
TTC
[ENA]
¡û
>WENV180944347
ODUC01014625
[ODUC] human metagenome; G_DNA_Supragingival plaque
434
361
-
Glu
TTC
[ENA]
¡û
>WENV180951953
ODUH01083453
[ODUH] human metagenome; G_DNA_Subgingival plaque
352
279
-
Glu
TTC
[ENA]
¡û
>WENV180975219
ODUY01003027
[ODUY] human metagenome; G_DNA_Supragingival plaque
4349
4422
+
Glu
TTC
[ENA]
¡û
>WENV180982069
ODVE01134498
[ODVE] human metagenome; G_DNA_Supragingival plaque
227
154
-
Glu
TTC
[ENA]
¡û
>WENV180999008
ODVT01004418
[ODVT] human metagenome; G_DNA_Buccal mucosa
2573
2500
-
Glu
TTC
[ENA]
¡û
>WENV181076934
OEAP01018272
[OEAP] human metagenome; G_DNA_Supragingival plaque
1992
2065
+
Glu
TTC
[ENA]
¡û
>WENV181081672
OEAS01320753
[OEAS] human metagenome; G_DNA_Supragingival plaque
73
-1
-
Glu
TTC
[ENA]
¡û
>WENV181084351
OEAV01160638
[OEAV] human metagenome; G_DNA_Supragingival plaque
215
142
-
Glu
TTC
[ENA]
¡û
>W141107079
AVQI01000067
Spirochaetota
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 [AVQI]
88188
88261
+
Glu
TTC
[ENA]
¡û
>WENV181091096
OEBC01012643
[OEBC] human metagenome; G_DNA_Supragingival plaque
1038
1111
+
Glu
TTC
[ENA]
¡û
>WENV181178261
OEJS01125231
[OEJS] human metagenome; G_DNA_Supragingival plaque
111
184
+
Glu
TTC
[ENA]
¡û
>WENV181180078
OEJT01070379
[OEJT] human metagenome; G_DNA_Supragingival plaque
318
245
-
Glu
TTC
[ENA]
¡û
>WENV182524442
OIWT01000221
[OIWT] human gut metagenome; faeces
57193
57120
-
Glu
TTC
[ENA]
¡û
>WENV182524524
OIWT01000297
[OIWT] human gut metagenome; faeces
64207
64280
+
Glu
TTC
[ENA]
¡û
>WENV182527370
OIWU01000209
[OIWU] human gut metagenome; faeces
57193
57120
-
Glu
TTC
[ENA]
¡û
>WENV182527605
OIWU01000477
[OIWU] human gut metagenome; faeces
41036
41109
+
Glu
TTC
[ENA]
¡û
>WENV183043918
OLGE01000153
[OLGE] human gut metagenome; faeces
57193
57120
-
Glu
TTC
[ENA]
¡û
>WENV183044695
OLGE01002084
[OLGE] human gut metagenome; faeces
9908
9981
+
Glu
TTC
[ENA]
¡û
>WENV183199180
OLPV01018768
[OLPV] human gut metagenome; faeces
2218
2147
-
Glu
TTC
[ENA]
¡û
>WENV183280860
OLSB01015702
[OLSB] human gut metagenome; faeces
2003
1930
-
Glu
TTC
[ENA]
¡û
>WENV183640752
OQVL01009932
[OQVL] human gut metagenome; human gut
2217
2290
+
Glu
TTC
[ENA]
¡û
>WENV183642200
OQVN01000228
[OQVN] human gut metagenome; human gut
9402
9475
+
Glu
TTC
[ENA]
¡û
>WENV183642285
OQVN01001066
[OQVN] human gut metagenome; human gut
5801
5728
-
Glu
TTC
[ENA]
¡û
>WENV183648824
OQVS01043947
[OQVS] human gut metagenome; human gut
1169
1242
+
Glu
TTC
[ENA]
¡û
>WENV183651104
OQVT01074245
[OQVT] human gut metagenome; human gut
921
848
-
Glu
TTC
[ENA]
¡û
>W141557322
JHVB01000001
Spirochaetota
Treponema sp. C6A8 [JHVB]
778228
778301
+
Glu
TTC
[ENA]
¡û
>W2010700136
JACHFQ010000002
Spirochaetota
Treponema ruminis DSM 103462 [JACHFQ]
174726
174653
-
Glu
TTC
[ENA]
¡û
>W2110250938
JACSET010000005
Spirochaetota
Treponema sp. Marseille-Q4130 [JACSET]
99907
99834
-
Glu
TTC
[ENA]
¡û
>W2110250963
JACSEU010000001
Spirochaetota
Treponema sp. Marseille-Q3903 [JACSEU]
1240911
1240984
+
Glu
TTC
[ENA]
¡û
>W2110492787
JAFEVM010000012
Spirochaetota
Treponema sp. Marseille-Q4523 [JAFEVM]
16483
16556
+
Glu
TTC
[ENA]
¡û
>C201314814
LR796240
Spirochaetota
Treponema socranskii subsp. buccale Marseille-CSURQ0203 [LR796240]
1759875
1759802
-
Glu
TTC
-
¡û
>C211039058
CP031518
Spirochaetota
Treponema ruminis RU1 [CP031518]
1037571
1037644
+
Glu
TTC
-
¡û
>C211095695
CP054142
Spirochaetota
Treponema parvum ATCC 700770 [CP054142]
1112348
1112419
+
Glu
TTC
-
¡û
>C211096354
CP054257
Spirochaetota
Treponema parvum ATCC 700773 [CP054257]
1549247
1549175
-
Glu
TTC
-
¡û
>C211116258
CP058315
Spirochaetota
Treponema parvum OMZ 843 [CP058315]
1073191
1073263
+
Glu
TTC
-
¡û
>W2110740582
JPUF01000023
Spirochaetota
Treponema zioleckii kT3 [JPUF]
37293
37366
+
Glu
TTC
[ENA]
¡û
>W2110740587
JPUF01000027
Spirochaetota
Treponema zioleckii kT3 [JPUF]
21061
20988
-
Glu
TTC
[ENA]
¡û
>W2110740613
JPUF01000093
Spirochaetota
Treponema zioleckii kT3 [JPUF]
981
1054
+
Glu
TTC
[ENA]
¡û
>C231070071
CP054258
Spirochaetota
Treponema socranskii subsp. buccale ATCC 35534 [CP054258]
2162533
2162460
-
Glu
TTC
-
¡û
>C241008284
AP025288
Spirochaetota
Treponema saccharophilum JCM 32279 [AP025288]
1121364
1121437
+
Glu
TTC
-
¡û
>C241008287
AP025288
Spirochaetota
Treponema saccharophilum JCM 32279 [AP025288]
1219442
1219515
+
Glu
TTC
-
¡û
>W121017619
AGRW01000051
Spirochaetota
Treponema saccharophilum DSM 2985 [AGRW]
54954
55027
+
Glu
TTC
[ENA]
¡û
>W121017623
AGRW01000054
Spirochaetota
Treponema saccharophilum DSM 2985 [AGRW]
271137
271210
+
Glu
TTC
[ENA]
¡û
>W121061418
AJGU01000044
Spirochaetota
Treponema sp. JC4 [AJGU]
6013
5940
-
Glu
TTC
[ENA]
¡û
>W1710551072
FOFU01000001
Spirochaetota
Treponema bryantii [FOFU]
373041
373114
+
Glu
TTC
[ENA]
¡û
>W1710565612
FORI01000004
Spirochaetota
Treponema bryantii [FORI]
172198
172271
+
Glu
TTC
[ENA]
¡û
>W1710600203
FUWG01000002
Spirochaetota
Treponema porcinum [FUWG]
154395
154468
+
Glu
TTC
[ENA]
¡û
>W1710601218
FUXC01000002
Spirochaetota
Treponema berlinense [FUXC]
229729
229800
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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