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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381770 (24 seq.)
>W1711044093
LRMT01000266
Betaproteobacteria
Cupriavidus sp. UYMMa02A [LRMT]
6313
6387
+
Arg
CCT
[ENA]
¡û
>C018469
AM260479
Betaproteobacteria
Cupriavidus necator H16 [AM260479, AM260480]
2891464
2891390
-
Arg
CCT
[Ensembl]
¡û
>W141150473
AXAK01000010
Betaproteobacteria
Cupriavidus taiwanensis STM 6018 [AXAK]
191452
191526
+
Arg
CCT
[ENA]
¡û
>C08008212
AM260479
Betaproteobacteria
Cupriavidus necator H16 [AM260479, AM260480]
2891464
2891393
-
Arg
CCT
[Ensembl]
¡û
>C08003758
CU633749
Betaproteobacteria
Cupriavidus taiwanensis LMG 19424 [CU633749]
2299396
2299325
-
Arg
CCT
[Ensembl]
¡û
>WENV183725099
PJQE01153053
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
268
194
-
Arg
CCT
[ENA]
¢þ
>WENV170653967
JRYK01001213
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
14726
14652
-
Arg
CCT
[ENA]
¢þ
>C191161491
CP038635
Betaproteobacteria
Cupriavidus oxalaticus X32 [CP038634, CP038635]
2555152
2555078
-
Arg
CCT
-
¡û
>C191164583
CP039287
Betaproteobacteria
Cupriavidus necator H16 [CP039287, CP039288]
2890723
2890649
-
Arg
CCT
-
¡û
>W1910501665
FYAR01000004
Betaproteobacteria
Cupriavidus metallidurans NDB2Meth2 [FYAR]
175348
175422
+
Arg
CCT
[ENA]
¡û
>W1911518461
OFST01000006
Betaproteobacteria
Cupriavidus taiwanensis [OFST]
37982
37908
-
Arg
CCT
[ENA]
¡û
>W1911518900
OFTC01000011
Betaproteobacteria
Cupriavidus neocaledonicus taiwanensis [OFTC]
37751
37677
-
Arg
CCT
[ENA]
¡û
>W1911519186
OFTH01000016
Betaproteobacteria
Cupriavidus taiwanensis [OFTH]
109284
109210
-
Arg
CCT
[ENA]
¡û
>W1911519230
OFTI01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTI]
153520
153446
-
Arg
CCT
[ENA]
¡û
>W1911519458
OFTM01000010
Betaproteobacteria
Cupriavidus taiwanensis [OFTM]
109640
109566
-
Arg
CCT
[ENA]
¡û
>W1911551393
OVTA01000010
Betaproteobacteria
Cupriavidus taiwanensis [OVTA]
42671
42597
-
Arg
CCT
[ENA]
¡û
>W1810539944
QDHA01000023
Betaproteobacteria
Cupriavidus necator CR12 [QDHA]
48746
48672
-
Arg
CCT
[ENA]
¡û
>W1810596756
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
2191931
2191857
-
Arg
CCT
[ENA]
¡û
>W1810685789
QKZN01000014
Betaproteobacteria
Cupriavidus alkaliphilus MLR2-44 [QKZN]
80224
80298
+
Arg
CCT
[ENA]
¡û
>W1510015078
BBQN01000025
Betaproteobacteria
Cupriavidus pauculus KF709 [BBQN]
12598
12524
-
Arg
CCT
[ENA]
¡û
>C11105771
CP002877
Betaproteobacteria
Cupriavidus necator N-1 [CP002877, CP002878]
2661372
2661298
-
Arg
CCT
[Ensembl]
¡û
>C161078292
CP014844
Betaproteobacteria
Cupriavidus nantongensis X1 [CP014844, CP014845]
3593707
3593633
-
Arg
CCT
[Ensembl]
¡û
>W1610053707
BBQI01000021
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
23442
23516
+
Arg
CCT
[ENA]
¡û
>W1710050085
BBQI01000021
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
23442
23516
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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