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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381781 (31 seq.)
>W1710864411
LMFV01000062
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
103059
102985
-
Val
CAC
[ENA]
¡û
>W1710864454
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
909915
909841
-
Val
CAC
[ENA]
¡û
>W1711188853
LWQU01000166
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
2696
2770
+
Val
CAC
[ENA]
¡û
>W1711353154
MDDT01000004
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
225919
225845
-
Val
CAC
[ENA]
¡û
>W1711353228
MDDU01000024
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
212269
212343
+
Val
CAC
[ENA]
¡û
>W1711385446
MEEF01000065
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
7905
7979
+
Val
CAC
[ENA]
¡û
>W1711501436
MKRQ01000050
Alphaproteobacteria
Rhizobiales bacterium 68-8 [MKRQ]
17289
17363
+
Val
CAC
[ENA]
¡û
>W1711505400
MKVL01000042
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
269098
269024
-
Val
CAC
[ENA]
¡û
>W141093743
AVBN01000024
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
106055
106129
+
Val
CAC
[ENA]
¡û
>W141093764
AVBO01000002
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
16149
16075
-
Val
CAC
[ENA]
¡û
>W141093868
AVBQ01000008
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
44478
44552
+
Val
CAC
[ENA]
¡û
>WENV181222555
OFDC01000007
[OFDC] hot springs metagenome; Water
270246
270172
-
Val
CAC
[ENA]
¢þ
>WENV181308200
OFIS01000653
[OFIS] sludge metagenome; sludge
277
351
+
Val
CAC
[ENA]
¢þ
>W141266718
CCMZ01000021
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
805
731
-
Val
CAC
[ENA]
¡û
>W141266814
CCNB01000006
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
65738
65664
-
Val
CAC
[ENA]
¡û
>W141266908
CCNE01000020
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
52824
52750
-
Val
CAC
[ENA]
¡û
>WENV183677313
ORJL011739335
[ORJL] groundwater metagenome; groundwater
194
268
+
Val
CAC
[ENA]
¢þ
>WENV183692419
ORMF011913640
[ORMF] groundwater metagenome; groundwater
610
536
-
Val
CAC
[ENA]
¢þ
>WENV183725279
PJQE01221826
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
236
162
-
Val
CAC
[ENA]
¢þ
>W141428508
JENY01000010
Alphaproteobacteria
Aquamicrobium defluvii [JENY]
99099
99025
-
Val
CAC
[ENA]
¡û
>C181155099
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
692928
692854
-
Val
CAC
-
¡û
>C181155149
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
692928
692854
-
Val
CAC
-
¡û
>C191064557
CP029562
Alphaproteobacteria
Mesorhizobium sp. Pch-S [CP029562]
6053756
6053830
+
Val
CAC
-
¡û
>W1810390401
PXYK01000052
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
1035
1109
+
Val
CAC
[ENA]
¡û
>C151099617
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
685639
685565
-
Val
CAC
[Ensembl]
¡û
>C151099618
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
685539
685465
-
Val
CAC
[Ensembl]
¡û
>W1511399908
JTGD01000033
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
7374
7448
+
Val
CAC
[ENA]
¡û
>W1610726757
LMFV01000062
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
103059
102985
-
Val
CAC
[ENA]
¡û
>W1610726800
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
909915
909841
-
Val
CAC
[ENA]
¡û
>W1610990972
LWQU01000166
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
2696
2770
+
Val
CAC
[ENA]
¡û
>W1710608920
FXBL01000004
Alphaproteobacteria
Mesorhizobium australicum [FXBL]
2607867
2607793
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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