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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381965 (31 seq.)
>WENV180013850
FPIC01004042
[FPIC] soil metagenome; Soil
245
173
-
Ala
TGC
[ENA]
¡û
>WENV181223415
OFDC01012487
[OFDC] hot springs metagenome; Water
184
256
+
Ala
TGC
[ENA]
¡û
>WENV181228704
OFEH01001369
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
1787
1858
+
Ala
TGC
[ENA]
¡û
>WENV181285371
OFGS01000056
[OFGS] hot springs metagenome; Water and soil
6314
6243
-
Ala
TGC
[ENA]
¡û
>WENV181407568
OGCG01042836
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
75
4
-
Ala
TGC
[ENA]
¡û
>WENV181407586
OGCG01044327
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
703
632
-
Ala
TGC
[ENA]
¡û
>C08005593
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1252494
1252423
-
Ala
TGC
[Ensembl]
¡û
>C08005600
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
789572
789501
-
Ala
TGC
[Ensembl]
¡û
>WENV170574101
FLYM01005628
[FLYM] hot springs metagenome; Sediment
212
284
+
Ala
TGC
[ENA]
¡û
>W09107144
ABFI01000022
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
16428
16499
+
Ala
TGC
[ENA]
¡û
>W1911493371
OBEN01000010
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
55390
55319
-
Ala
TGC
[ENA]
¡û
>C151003664
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1243639
1243568
-
Ala
TGC
[Ensembl]
¡û
>C151003669
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
775547
775476
-
Ala
TGC
[Ensembl]
¡û
>C151003708
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1243509
1243438
-
Ala
TGC
[Ensembl]
¡û
>C151003713
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
775602
775531
-
Ala
TGC
[Ensembl]
¡û
>W2011154322
OBEN01000010
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
55390
55319
-
Ala
TGC
[ENA]
¡û
>C211344111
CP076323
Aquificota
Hydrogenobacter thermophilus [CP076323]
1668204
1668132
-
Ala
TGC
-
¡û
>C211344138
CP076324
Aquificota
Aquificae bacterium [CP076324]
720321
720393
+
Ala
TGC
-
¡û
>W10115216
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3246
3175
-
Ala
TGC
[ENA]
¡û
>C10107887
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
246604
246532
-
Ala
TGC
-
¡û
>C11111360
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
246594
246522
-
Ala
TGC
-
¡û
>W11118802
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3246
3175
-
Ala
TGC
[ENA]
¡û
>C131013403
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1243833
1243762
-
Ala
TGC
[Ensembl]
¡û
>C131013408
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
775575
775504
-
Ala
TGC
[Ensembl]
¡û
>C131013715
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1243796
1243725
-
Ala
TGC
[Ensembl]
¡û
>C131013720
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
775541
775470
-
Ala
TGC
[Ensembl]
¡û
>ENV000337
AF352543
Environmental sample from ENV division of INSDC
182
256
+
Ala
TGC
[ENA]
>ENV000338
AF352544
Environmental sample from ENV division of INSDC
181
255
+
Ala
TGC
[ENA]
>ENV000340
AF352545
Environmental sample from ENV division of INSDC
182
256
+
Ala
TGC
[ENA]
>ENV000342
AF352546
Environmental sample from ENV division of INSDC
182
256
+
Ala
TGC
[ENA]
>ENV000344
AF352547
Environmental sample from ENV division of INSDC
182
256
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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