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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381992 (21 seq.)
>C171047039
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
1586414
1586488
+
Thr
GGT
-
¡û
>WENV180016126
FSUD01000181
[FSUD] metagenome; soil
722
648
-
Thr
GGT
[ENA]
¡û
>WENV183748795
PPFU01082197
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3413
3339
-
Thr
GGT
[ENA]
¡û
>WENV170117166
CENI01053155
[CENI] marine metagenome genome assembly TARA_023_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3219
3145
-
Thr
GGT
[ENA]
¡û
>WENV170323946
CESS01038173
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
420
346
-
Thr
GGT
[ENA]
¡û
>WENV170458594
CEVB01125174
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
564
638
+
Thr
GGT
[ENA]
¡û
>WENV170596581
FUIF01002740
[FUIF] marine metagenome; marine
378
452
+
Thr
GGT
[ENA]
¡û
>WENV170857158
MDTB01005021
[MDTB] marine metagenome; seawater
3194
3268
+
Thr
GGT
[ENA]
¡û
>WENV170985043
MWVW01013511
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
895
969
+
Thr
GGT
[ENA]
¡û
>WENV170997672
MWWG01235262
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
166
92
-
Thr
GGT
[ENA]
¡û
>C191002745
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
2828081
2828155
+
Thr
GGT
-
¡û
>W2010567714
JAATJI010000002
Alphaproteobacteria
Polymorphobacter fuscus DSM 105347 [JAATJI]
125608
125682
+
Thr
GGT
[ENA]
¡û
>W2012063545
VJWA01000001
Alphaproteobacteria
Sandarakinorhabdus sp. LB1R16 [VJWA]
1810539
1810465
-
Thr
GGT
[ENA]
¡û
>W2012308132
WEFI01000003
Alphaproteobacteria
Polymorphobacter fuscus D40P [WEFI]
448419
448345
-
Thr
GGT
[ENA]
¡û
>W2012337760
WIOL01000003
Alphaproteobacteria
Polymorphobacter fuscus D40P [WIOL]
448419
448345
-
Thr
GGT
[ENA]
¡û
>W2110027850
BMJM01000015
Alphaproteobacteria
Polymorphobacter glacialis CGMCC 1.15519 [BMJM]
25922
25848
-
Thr
GGT
[ENA]
¡û
>C211374831
CP080243
Alphaproteobacteria
Polymorphobacter sp. PAMC 29334 [CP080243]
67549
67623
+
Thr
GGT
-
¡û
>C211388436
CP081848
Alphaproteobacteria
Polymorphobacter sp. PAMC 29362 [CP081848]
1550652
1550578
-
Thr
GGT
-
¡û
>C231565257
CP115174
Alphaproteobacteria
Sphingomonas sp. PAMB00755 [CP115174]
698611
698685
+
Thr
GGT
-
¡û
>C241253451
CP124576
Alphaproteobacteria
Sphingobium sp. AP49 [CP124576]
325468
325542
+
Thr
GGT
-
¡û
>W11167372
AFMP01000062
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
9103
9177
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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