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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382010 (16 seq.)
>W131178000
ARLF01000001
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
1571727
1571653
-
Gly
TCC
[ENA]
¡û
>W131186697
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
2234285
2234359
+
Gly
TCC
[ENA]
¡û
>W131186709
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
1112676
1112602
-
Gly
TCC
[ENA]
¡û
>W141170936
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
1212848
1212774
-
Gly
TCC
[ENA]
¡û
>C191004364
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
341113
341187
+
Gly
TCC
-
¡û
>W141733775
JNLD01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
273566
273640
+
Gly
TCC
[ENA]
¡û
>W141733808
JNLD01000004
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
251665
251591
-
Gly
TCC
[ENA]
¡û
>W2010663095
JACBGI010000010
Gammaproteobacteria
Thiomicrorhabdus sp. HH1 [JACBGI]
396
322
-
Gly
TCC
[ENA]
¡û
>W2010663105
JACBGI010000021
Gammaproteobacteria
Thiomicrorhabdus sp. HH1 [JACBGI]
25339
25265
-
Gly
TCC
[ENA]
¡û
>ENV09001806
ACQI01008886
Hydrothermal vent metagenome LCHCB.C1
188
114
-
Gly
TCC
[ENA]
¡û
>ENV09001914
ACQI01025638
Hydrothermal vent metagenome LCHCB.C1
318
244
-
Gly
TCC
[ENA]
¡û
>C231004106
AP024202
Gammaproteobacteria
Thiomicrorhabdus immobilis Am19 [AP024202]
411720
411794
+
Gly
TCC
-
¡û
>C231004136
AP024202
Gammaproteobacteria
Thiomicrorhabdus immobilis Am19 [AP024202]
1952623
1952549
-
Gly
TCC
-
¡û
>C231452539
CP102381
Gammaproteobacteria
Thiomicrorhabdus sp. XGS-01 [CP102381]
405849
405923
+
Gly
TCC
-
¡û
>C231452569
CP102381
Gammaproteobacteria
Thiomicrorhabdus sp. XGS-01 [CP102381]
1929195
1929121
-
Gly
TCC
-
¡û
>C241004816
AP021888
Gammaproteobacteria
Thiosulfativibrio zosterae AkT22 [AP021888]
558524
558598
+
Gly
TCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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