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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382095 (11 seq.)
>W1710777992
LJCO01000019
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
5002
4928
-
Cys
GCA
[ENA]
¡û
>WENV182137026
OHKK01052526
[OHKK] human gut metagenome; feces
53
127
+
Cys
GCA
[ENA]
¡û
>WENV170558516
CXWL01075229
[CXWL] groundwater metagenome; biofilm material
1268
1341
+
Cys
GCA
[ENA]
¡û
>W141730583
JNIL01000001
Bacillota
Alicyclobacillus macrosporangiidus CPP55 [JNIL]
1272143
1272069
-
Cys
GCA
[ENA]
¡û
>C211286180
CP071182
Bacillota
Alicyclobacillus ferrooxydans S30H14 [CP071182]
3796923
3796849
-
Cys
GCA
-
¡û
>C211286203
CP071184
Bacillota
Alicyclobacillus ferrooxydans ALEF1 [CP071184]
5889213
5889287
+
Cys
GCA
-
¡û
>C211286204
CP071184
Bacillota
Alicyclobacillus ferrooxydans ALEF1 [CP071184]
5918035
5918109
+
Cys
GCA
-
¡û
>C231107947
CP066784
Bacillota
Alicyclobacillus sp. ALC3 [CP066784]
3684910
3684984
+
Cys
GCA
-
¡û
>C231112402
CP067097
Bacillota
Alicyclobacillus cycloheptanicus SCH [CP067097]
2606643
2606717
+
Cys
GCA
-
¡û
>W1610642178
LJCO01000019
Bacillota
Alicyclobacillus ferrooxydans [LJCO]
5002
4928
-
Cys
GCA
[ENA]
¡û
>W1710578758
FPBV01000003
Bacillota
Alicyclobacillus macrosporangiidus [FPBV]
480
406
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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