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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382261 (23 seq.)
>C171083844
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
597229
597155
-
Arg
CCT
-
¡û
>C171094256
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
534454
534380
-
Arg
CCT
-
¡û
>WENV181111337
OEEK01058128
[OEEK] human metagenome; G_DNA_Stool
104
30
-
Arg
CCT
[ENA]
¡û
>WENV181149749
OEHT01246597
[OEHT] human metagenome; G_DNA_Stool
124
198
+
Arg
CCT
[ENA]
¡û
>WENV181469028
OGES01035179
[OGES] metagenome; Human gut stool
842
768
-
Arg
CCT
[ENA]
¡û
>WENV181882926
OGXI01000750
[OGXI] human gut metagenome; faeces
14666
14592
-
Arg
CCT
[ENA]
¡û
>WENV181888263
OGXM01001259
[OGXM] human gut metagenome; faeces
112
38
-
Arg
CCT
[ENA]
¡û
>WENV181899070
OGXT01062903
[OGXT] human gut metagenome; faeces
81
155
+
Arg
CCT
[ENA]
¡û
>WENV181914002
OGYE01067876
[OGYE] human gut metagenome; faeces
674
600
-
Arg
CCT
[ENA]
¡û
>WENV181915967
OGYF01030255
[OGYF] human gut metagenome; faeces
24
98
+
Arg
CCT
[ENA]
¡û
>WENV181956157
OGZK01032048
[OGZK] human gut metagenome; faeces
276
202
-
Arg
CCT
[ENA]
¡û
>WENV181998297
OHAU01048892
[OHAU] human gut metagenome; faeces
105
179
+
Arg
CCT
[ENA]
¡û
>WENV183362946
OLXK01054629
[OLXK] human gut metagenome; feces
538
464
-
Arg
CCT
[ENA]
¡û
>WENV183576169
OOCI01037885
[OOCI] human gut metagenome; human gut
814
740
-
Arg
CCT
[ENA]
¡û
>WENV170069024
CDZP01028456
[CDZP] gut metagenome; human stools
1068
994
-
Arg
CCT
[ENA]
¡û
>WENV170071166
CDZQ01048315
[CDZQ] gut metagenome; human stools
14485
14411
-
Arg
CCT
[ENA]
¡û
>W09119250
ACDQ01000011
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
486029
486103
+
Arg
CCT
[ENA]
¡û
>W2010264348
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1828286
1828360
+
Arg
CCT
[ENA]
¡û
>C201107539
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
2157031
2157105
+
Arg
CCT
-
¡û
>C231399329
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
381609
381535
-
Arg
CCT
-
¡û
>C231399343
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
1765812
1765886
+
Arg
CCT
-
¡û
>C231399414
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
785386
785312
-
Arg
CCT
-
¡û
>C231399463
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
602154
602080
-
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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