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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382278 (121 seq.)
>W1711066753
LSDE01000006
Actinomycetota
Olsenella sp. DNF00959 [LSDE]
205490
205564
+
Val
GAC
[ENA]
¡û
>W1712036522
NFHO01000003
Actinomycetota
Enorma massiliensis [NFHO]
243739
243665
-
Val
GAC
[ENA]
¡û
>W1712037415
NFIE01000012
Actinomycetota
[Collinsella] massiliensis [NFIE]
52600
52674
+
Val
GAC
[ENA]
¡û
>W1712037995
NFIP01000002
Actinomycetota
Collinsella sp. An307 [NFIP]
56875
56949
+
Val
GAC
[ENA]
¡û
>W1712038523
NFIZ01000016
Actinomycetota
Olsenella sp. An285 [NFIZ]
8018
8092
+
Val
GAC
[ENA]
¡û
>C171130117
LT635455
Actinomycetota
Olsenella timonensis Marseille-P2300 [LT635455]
1326099
1326025
-
Val
GAC
-
¡û
>W131243902
CAPI01000101
Actinomycetota
[Collinsella] massiliensis GD3 [CAPI]
7112
7186
+
Val
GAC
[ENA]
¡û
>WENV180172675
OAVX01018218
[OAVX] human gut metagenome; faeces
320
394
+
Val
GAC
[ENA]
¢þ
>WENV180199992
OBAE01004277
[OBAE] human gut metagenome; human gut
1738
1812
+
Val
GAC
[ENA]
¢þ
>WENV180211924
OBAM01045595
[OBAM] human gut metagenome; human gut
386
312
-
Val
GAC
[ENA]
¢þ
>WENV180326921
OBKS01240209
[OBKS] human gut metagenome; human gut
48
122
+
Val
GAC
[ENA]
¢þ
>WENV180421360
OBVQ01001058
[OBVQ] human gut metagenome; faeces
925
999
+
Val
GAC
[ENA]
¢þ
>WENV180444302
OBWZ01000658
[OBWZ] human gut metagenome; faeces
836
910
+
Val
GAC
[ENA]
¢þ
>WENV180481136
OBZE01000995
[OBZE] human gut metagenome; faeces
4192
4118
-
Val
GAC
[ENA]
¢þ
>WENV180481140
OBZE01000995
[OBZE] human gut metagenome; faeces
3606
3532
-
Val
GAC
[ENA]
¢þ
>WENV180481853
OBZF01004067
[OBZF] human gut metagenome; faeces
1104
1178
+
Val
GAC
[ENA]
¢þ
>WENV180483826
OBZH01002973
[OBZH] human gut metagenome; faeces
1276
1202
-
Val
GAC
[ENA]
¢þ
>WENV180552929
OCJH01256440
[OCJH] human gut metagenome; human gut
19
93
+
Val
GAC
[ENA]
¢þ
>WENV180555553
OCJO01190065
[OCJO] human gut metagenome; human gut
20
94
+
Val
GAC
[ENA]
¢þ
>WENV180562773
OCLB01091461
[OCLB] human gut metagenome; human gut
104
178
+
Val
GAC
[ENA]
¢þ
>WENV180563551
OCLC01081622
[OCLC] human gut metagenome; human gut
117
43
-
Val
GAC
[ENA]
¢þ
>WENV180566166
OCLH01106954
[OCLH] human gut metagenome; human gut
47
121
+
Val
GAC
[ENA]
¢þ
>WENV180620689
OCQB01230892
[OCQB] human gut metagenome; human gut
97
23
-
Val
GAC
[ENA]
¢þ
>WENV180818935
ODJQ01137601
[ODJQ] human metagenome; G_DNA_Stool
31
105
+
Val
GAC
[ENA]
¢þ
>WENV180851866
ODKV01257278
[ODKV] human metagenome; G_DNA_Stool
144
70
-
Val
GAC
[ENA]
¢þ
>WENV181237262
OFFB01000041
[OFFB] mouse gut metagenome; faeces
116968
116894
-
Val
GAC
[ENA]
¢þ
>WENV181238890
OFFC01008334
[OFFC] mouse gut metagenome; faeces
820
746
-
Val
GAC
[ENA]
¢þ
>WENV181248705
OFFM01000003
[OFFM] mouse gut metagenome; faeces
321368
321294
-
Val
GAC
[ENA]
¢þ
>WENV181252656
OFFQ01000002
[OFFQ] mouse gut metagenome; faeces
403081
403007
-
Val
GAC
[ENA]
¢þ
>WENV181254863
OFFS01000002
[OFFS] mouse gut metagenome; faeces
60852
60926
+
Val
GAC
[ENA]
¢þ
>WENV181262924
OFFY01076693
[OFFY] mouse gut metagenome; faeces
16
90
+
Val
GAC
[ENA]
¢þ
>WENV181267712
OFGD01000002
[OFGD] mouse gut metagenome; faeces
360498
360424
-
Val
GAC
[ENA]
¢þ
>WENV181274281
OFGI01000068
[OFGI] mouse gut metagenome; faeces
59175
59101
-
Val
GAC
[ENA]
¢þ
>WENV181333063
OFMA01026026
[OFMA] human gut metagenome; human gut
497
571
+
Val
GAC
[ENA]
¢þ
>WENV181421479
OGCN01061635
[OGCN] human gut metagenome; human gut
137
63
-
Val
GAC
[ENA]
¢þ
>WENV181423679
OGCO01015139
[OGCO] human gut metagenome; human gut
337
411
+
Val
GAC
[ENA]
¢þ
>WENV181436598
OGDF01022886
[OGDF] human gut metagenome; human gut
3515
3441
-
Val
GAC
[ENA]
¢þ
>WENV181679335
OGOS01000248
[OGOS] human gut metagenome; faeces
8904
8978
+
Val
GAC
[ENA]
¢þ
>WENV181689645
OGOY01003588
[OGOY] human gut metagenome; faeces
22
96
+
Val
GAC
[ENA]
¢þ
>WENV181707717
OGPL01067289
[OGPL] human gut metagenome; faeces
99
25
-
Val
GAC
[ENA]
¢þ
>WENV181721876
OGPV01011769
[OGPV] human gut metagenome; faeces
2951
2877
-
Val
GAC
[ENA]
¢þ
>WENV181723639
OGPW01012058
[OGPW] human gut metagenome; faeces
658
584
-
Val
GAC
[ENA]
¢þ
>WENV181731056
OGQC01072265
[OGQC] human gut metagenome; faeces
259
185
-
Val
GAC
[ENA]
¢þ
>WENV181791103
OGRP01007583
[OGRP] human gut metagenome; faeces
1956
1882
-
Val
GAC
[ENA]
¢þ
>WENV181826018
OGUL01003897
[OGUL] human gut metagenome; faeces
1318
1392
+
Val
GAC
[ENA]
¢þ
>WENV181864777
OGWU01002177
[OGWU] human gut metagenome; faeces
8944
8870
-
Val
GAC
[ENA]
¢þ
>WENV181910923
OGYD01000062
[OGYD] human gut metagenome; faeces
5420
5494
+
Val
GAC
[ENA]
¢þ
>WENV181940450
OGYX01074832
[OGYX] human gut metagenome; faeces
166
92
-
Val
GAC
[ENA]
¢þ
>WENV181953810
OGZI01033283
[OGZI] human gut metagenome; faeces
1023
949
-
Val
GAC
[ENA]
¢þ
>WENV181961838
OGZO01029721
[OGZO] human gut metagenome; faeces
1096
1022
-
Val
GAC
[ENA]
¢þ
>WENV181982054
OHAG01019389
[OHAG] human gut metagenome; faeces
1240
1166
-
Val
GAC
[ENA]
¢þ
>WENV182272083
OHUG01003912
[OHUG] human gut metagenome; feces
317
391
+
Val
GAC
[ENA]
¢þ
>WENV182278889
OHUT01010936
[OHUT] human gut metagenome; feces
987
913
-
Val
GAC
[ENA]
¢þ
>WENV182281683
OHVB01016284
[OHVB] human gut metagenome; feces
732
658
-
Val
GAC
[ENA]
¢þ
>WENV182292990
OHWB01025829
[OHWB] human gut metagenome; feces
238
312
+
Val
GAC
[ENA]
¢þ
>WENV182297897
OHWH01025324
[OHWH] human gut metagenome; feces
467
393
-
Val
GAC
[ENA]
¢þ
>WENV182362275
OICD01014684
[OICD] human gut metagenome; feces
1454
1528
+
Val
GAC
[ENA]
¢þ
>WENV182378500
OIDK01005847
[OIDK] human gut metagenome; feces
960
1034
+
Val
GAC
[ENA]
¢þ
>WENV182391793
OIEF01058862
[OIEF] human gut metagenome; human gut
20
94
+
Val
GAC
[ENA]
¢þ
>WENV182394123
OIEI01014758
[OIEI] human gut metagenome; human gut
993
1067
+
Val
GAC
[ENA]
¢þ
>W141241113
CAGZ01000025
Actinomycetota
Enorma massiliensis phI [CAGZ]
203797
203723
-
Val
GAC
[ENA]
¡û
>WENV182511316
OIWK01046922
[OIWK] human gut metagenome; faeces
482
556
+
Val
GAC
[ENA]
¢þ
>WENV182607863
OJJU01045632
[OJJU] metagenome; faeces
364
290
-
Val
GAC
[ENA]
¢þ
>WENV182625074
OJKO01058694
[OJKO] metagenome; faeces
172
246
+
Val
GAC
[ENA]
¢þ
>WENV182869528
OKRT01006724
[OKRT] human gut metagenome; faeces
2384
2310
-
Val
GAC
[ENA]
¢þ
>WENV182873635
OKRW01000914
[OKRW] human gut metagenome; faeces
25918
25844
-
Val
GAC
[ENA]
¢þ
>WENV182873726
OKRW01001237
[OKRW] human gut metagenome; faeces
1252
1326
+
Val
GAC
[ENA]
¢þ
>WENV182873804
OKRW01001506
[OKRW] human gut metagenome; faeces
16467
16541
+
Val
GAC
[ENA]
¢þ
>WENV182927215
OKUM01013106
[OKUM] human gut metagenome; feces
130
56
-
Val
GAC
[ENA]
¢þ
>WENV182928583
OKUO01003454
[OKUO] human gut metagenome; feces
407
481
+
Val
GAC
[ENA]
¢þ
>WENV183047525
OLGF01007098
[OLGF] human gut metagenome; faeces
1377
1451
+
Val
GAC
[ENA]
¢þ
>WENV183100216
OLNF01072665
[OLNF] human gut metagenome; faeces
650
724
+
Val
GAC
[ENA]
¢þ
>WENV183101888
OLNH01004001
[OLNH] human gut metagenome; faeces
86
12
-
Val
GAC
[ENA]
¢þ
>WENV183104845
OLNK01002341
[OLNK] human gut metagenome; faeces
1639
1713
+
Val
GAC
[ENA]
¢þ
>WENV183119183
OLNT01003187
[OLNT] human gut metagenome; faeces
269
343
+
Val
GAC
[ENA]
¢þ
>WENV183149580
OLOO01009913
[OLOO] human gut metagenome; faeces
307
233
-
Val
GAC
[ENA]
¢þ
>WENV183156729
OLOS01025444
[OLOS] human gut metagenome; faeces
667
741
+
Val
GAC
[ENA]
¢þ
>WENV183168145
OLOZ01004381
[OLOZ] human gut metagenome; faeces
1228
1302
+
Val
GAC
[ENA]
¢þ
>WENV183176022
OLPF01001880
[OLPF] human gut metagenome; faeces
14395
14321
-
Val
GAC
[ENA]
¢þ
>WENV183178259
OLPG01064230
[OLPG] human gut metagenome; faeces
53
127
+
Val
GAC
[ENA]
¢þ
>WENV183186893
OLPO01003317
[OLPO] human gut metagenome; faeces
3399
3473
+
Val
GAC
[ENA]
¢þ
>WENV183187318
OLPO01012416
[OLPO] human gut metagenome; faeces
862
788
-
Val
GAC
[ENA]
¢þ
>WENV183187746
OLPO01060888
[OLPO] human gut metagenome; faeces
655
581
-
Val
GAC
[ENA]
¢þ
>WENV183195780
OLPT01033806
[OLPT] human gut metagenome; faeces
321
247
-
Val
GAC
[ENA]
¢þ
>WENV183241849
OLRB01000817
[OLRB] human gut metagenome; faeces
15910
15984
+
Val
GAC
[ENA]
¢þ
>WENV183266669
OLRT01006817
[OLRT] human gut metagenome; faeces
3731
3657
-
Val
GAC
[ENA]
¢þ
>WENV183281210
OLSB01049380
[OLSB] human gut metagenome; faeces
511
585
+
Val
GAC
[ENA]
¢þ
>WENV183300415
OLSO01000402
[OLSO] human gut metagenome; faeces
57
131
+
Val
GAC
[ENA]
¢þ
>WENV183322116
OLVX01000727
[OLVX] human gut metagenome; faeces
1514
1588
+
Val
GAC
[ENA]
¢þ
>WENV183363096
OLXK01096640
[OLXK] human gut metagenome; feces
201
275
+
Val
GAC
[ENA]
¢þ
>WENV183364042
OLXM01000309
[OLXM] human gut metagenome; feces
6317
6243
-
Val
GAC
[ENA]
¢þ
>WENV183367469
OLXQ01000940
[OLXQ] human gut metagenome; feces
6249
6175
-
Val
GAC
[ENA]
¢þ
>WENV183552647
OOBJ01019041
[OOBJ] human gut metagenome; human gut
115
41
-
Val
GAC
[ENA]
¢þ
>WENV183646745
OQVR01013063
[OQVR] human gut metagenome; human gut
629
703
+
Val
GAC
[ENA]
¢þ
>WENV183657406
OQWI01010356
[OQWI] human gut metagenome; human gut
719
793
+
Val
GAC
[ENA]
¢þ
>WENV183756054
PPYE01121712
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
160
86
-
Val
GAC
[ENA]
¢þ
>WENV170026211
CDTW01026567
[CDTW] gut metagenome; human stools
1547
1473
-
Val
GAC
[ENA]
¢þ
>WENV170540117
CWGU01000054
[CWGU] human gut metagenome; ENVO:feces
73618
73692
+
Val
GAC
[ENA]
¢þ
>WENV170540302
CWGY01000030
[CWGY] human gut metagenome; ENVO:feces
12625
12699
+
Val
GAC
[ENA]
¢þ
>WENV170540303
CWGY01000030
[CWGY] human gut metagenome; ENVO:feces
13796
13870
+
Val
GAC
[ENA]
¢þ
>WENV170636551
JFBN01302574
[JFBN] chicken gut metagenome; ceca of Broiler chicken
3506
3432
-
Val
GAC
[ENA]
¢þ
>WENV170636971
JFBN01307312
[JFBN] chicken gut metagenome; ceca of Broiler chicken
4851
4777
-
Val
GAC
[ENA]
¢þ
>WENV170669630
LAHS01000943
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
2571
2497
-
Val
GAC
[ENA]
¢þ
>WENV170669948
LAHS01009907
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
79
153
+
Val
GAC
[ENA]
¢þ
>W09108654
ABTM01000001
Actinomycetota
Cryptobacterium curtum DSM 15641 [ABTM]
493847
493921
+
Val
GAC
[ENA]
¡û
>W09134659
ACUX01000005
Actinomycetota
Slackia exigua ATCC 700122 [ACUX]
125636
125710
+
Val
GAC
[ENA]
¡û
>C191002857
AP018530
Actinomycetota
Olsenella sp. GAM18 [AP018530]
641635
641709
+
Val
GAC
-
¡û
>C191002862
AP018530
Actinomycetota
Olsenella sp. GAM18 [AP018530]
707071
707145
+
Val
GAC
-
¡û
>C191007307
AP019367
Actinomycetota
Parolsenella catena JCM 31932 [AP019367]
487416
487490
+
Val
GAC
-
¡û
>W1910237161
FPKO01000007
Actinomycetota
Thermophilibacter mediterraneus Marseille-P3256 [FPKO]
177373
177447
+
Val
GAC
[ENA]
¡û
>W1910237829
FPLI01000033
Actinomycetota
Olsenella phocaeensis Marseille-P2936 [FPLI]
27107
27181
+
Val
GAC
[ENA]
¡û
>W1910503501
FYCL01000011
Actinomycetota
Enorma phocaeensis Marseille-P3242 [FYCL]
144362
144288
-
Val
GAC
[ENA]
¡û
>W1810871341
QUCY01000001
Actinomycetota
Eggerthella sp. AM16-19 [QUCY]
234542
234468
-
Val
GAC
[ENA]
¡û
>W1810871345
QUCY01000001
Actinomycetota
Eggerthella sp. AM16-19 [QUCY]
233956
233882
-
Val
GAC
[ENA]
¡û
>C11105178
CP002628
Actinomycetota
Coriobacterium glomerans PW2 [CP002628]
1453057
1452983
-
Val
GAC
[Ensembl]
¡û
>C161035133
CP011402
Actinomycetota
Denitrobacterium detoxificans NPOH1 [CP011402]
1292609
1292683
+
Val
GAC
[Ensembl]
¡û
>W121000511
ACVE01000001
Actinomycetota
Olsenella sp. oral taxon 809 oral taxon 809 str. F0356 [ACVE]
17469
17395
-
Val
GAC
[ENA]
¡û
>W121112740
ALNO01000016
Actinomycetota
Slackia sp. CM382 [ALNO]
248044
247970
-
Val
GAC
[ENA]
¡û
>W1610207272
FCOU01000014
Actinomycetota
Collinsella ihumii GD7 [FCOU]
66102
66176
+
Val
GAC
[ENA]
¡û
>W1610907323
LSDE01000006
Actinomycetota
Olsenella sp. DNF00959 [LSDE]
205490
205564
+
Val
GAC
[ENA]
¡û
>W1710207966
FCOU01000014
Actinomycetota
Collinsella ihumii GD7 [FCOU]
66102
66176
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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