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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382337 (60 seq.)
>W1710864163
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
156266
156340
+
Val
TAC
[ENA]
¡û
>W1710864463
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
80904
80978
+
Val
TAC
[ENA]
¡û
>W1710865961
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
176938
177012
+
Val
TAC
[ENA]
¡û
>W1710866012
LMHD01000010
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
65275
65201
-
Val
TAC
[ENA]
¡û
>W1710899405
LNIY01000002
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
10599
10673
+
Val
TAC
[ENA]
¡û
>W131221561
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
126741
126815
+
Val
TAC
[ENA]
¡û
>W131226673
AUEO01000002
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
74907
74833
-
Val
TAC
[ENA]
¡û
>WENV180015867
FSTO01000019
[FSTO] metagenome; soil
675
749
+
Val
TAC
[ENA]
¡û
>WENV180015880
FSTP01000325
[FSTP] metagenome; soil
3065
2991
-
Val
TAC
[ENA]
¡û
>WENV180016609
FSVN01000091
[FSVN] metagenome; soil
5620
5546
-
Val
TAC
[ENA]
¡û
>WENV180024320
FTIG01111826
[FTIG] metagenome; soil
1513
1587
+
Val
TAC
[ENA]
¡û
>WENV180029151
FTJI01083289
[FTJI] metagenome; soil
43
117
+
Val
TAC
[ENA]
¡û
>WENV180030680
FTJN01002811
[FTJN] metagenome; soil
91112
91038
-
Val
TAC
[ENA]
¡û
>WENV180033709
FTKL01024669
[FTKL] metagenome; soil
2581
2655
+
Val
TAC
[ENA]
¡û
>WENV180034677
FTKR01086277
[FTKR] metagenome; soil
43
117
+
Val
TAC
[ENA]
¡û
>WENV181169750
OEIV010009259
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2639
2713
+
Val
TAC
[ENA]
¡û
>C08002376
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3082320
3082249
-
Val
TAC
[Ensembl]
¡û
>WENV183731630
PJTT01000071
[PJTT] soil metagenome; Soil (2) enriched on wood chips
3810
3884
+
Val
TAC
[ENA]
¡û
>WENV183743337
PJUJ01000540
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
9253
9327
+
Val
TAC
[ENA]
¡û
>WENV183743388
PJUJ01000804
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3508
3582
+
Val
TAC
[ENA]
¡û
>WENV183744077
PJUK01000336
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
9234
9308
+
Val
TAC
[ENA]
¡û
>WENV183744219
PJUK01002198
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1625
1551
-
Val
TAC
[ENA]
¡û
>WENV183744958
PJUL01000926
[PJUL] feces metagenome; Chicken feces enriched on filter paper
9253
9327
+
Val
TAC
[ENA]
¡û
>WENV183745022
PJUL01001390
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3508
3582
+
Val
TAC
[ENA]
¡û
>WENV170555401
CXWL01000479
[CXWL] groundwater metagenome; biofilm material
118827
118753
-
Val
TAC
[ENA]
¡û
>WENV170555781
CXWL01002153
[CXWL] groundwater metagenome; biofilm material
76944
77018
+
Val
TAC
[ENA]
¡û
>WENV170557299
CXWL01023371
[CXWL] groundwater metagenome; biofilm material
3262
3336
+
Val
TAC
[ENA]
¡û
>C191040415
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
3710024
3710098
+
Val
TAC
-
¡û
>W141779490
JONW01000007
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
470569
470643
+
Val
TAC
[ENA]
¡û
>W141815965
JQJN01000011
Alphaproteobacteria
Caulobacter henricii [JQJN]
56942
57016
+
Val
TAC
[ENA]
¡û
>W141816057
JQJP01000009
Alphaproteobacteria
Caulobacter henricii [JQJP]
129023
129097
+
Val
TAC
[ENA]
¡û
>W141819040
JQLZ01000005
Alphaproteobacteria
Caulobacter henricii [JQLZ]
195338
195412
+
Val
TAC
[ENA]
¡û
>W1810073501
PEGG01000016
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
11494
11568
+
Val
TAC
[ENA]
¡û
>W1810177586
PJRQ01000019
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
101822
101748
-
Val
TAC
[ENA]
¡û
>W1810177713
PJRS01000043
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
36292
36218
-
Val
TAC
[ENA]
¡û
>W1810474474
QAII01000048
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
30053
30127
+
Val
TAC
[ENA]
¡û
>W1810474992
QAIR01000021
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
23451
23525
+
Val
TAC
[ENA]
¡û
>W1810543681
QDKP01000011
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
275757
275683
-
Val
TAC
[ENA]
¡û
>W2010325865
CACVCE010000028
Alphaproteobacteria
Magnetospirillum sp. LM-5 [CACVCE]
10304
10230
-
Val
TAC
[ENA]
¡û
>W2010493255
JAAKGT010000001
Alphaproteobacteria
Caulobacter sp. 602-2 [JAAKGT]
141717
141791
+
Val
TAC
[ENA]
¡û
>W2011532037
SBJL01000001
Alphaproteobacteria
Alphaproteobacteria bacterium SYSU XM001 [SBJL]
760671
760597
-
Val
TAC
[ENA]
¡û
>W2011626128
SLZL01000002
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
109391
109465
+
Val
TAC
[ENA]
¡û
>W2012047486
VIVU01000003
Alphaproteobacteria
Caulobacter henricii 536 [VIVU]
157137
157063
-
Val
TAC
[ENA]
¡û
>W2012048362
VIWK01000003
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
157118
157044
-
Val
TAC
[ENA]
¡û
>W2110394113
JADWOX010000002
Alphaproteobacteria
Caulobacter hibisci KACC 18849 [JADWOX]
494987
495061
+
Val
TAC
[ENA]
¡û
>W1510017010
BBSY01000003
Alphaproteobacteria
alpha proteobacterium U9-1i [BBSY]
680330
680256
-
Val
TAC
[ENA]
¡û
>C231366122
CP096134
Alphaproteobacteria
Hyphomonadaceae bacterium JAD_PAG50586_4 [CP096134]
1920213
1920287
+
Val
TAC
-
¡û
>C231562990
CP114871
Alphaproteobacteria
Caulobacter sp. NIBR2454 [CP114871]
2032910
2032836
-
Val
TAC
-
¡û
>C241131731
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
3196020
3195946
-
Val
TAC
-
¡û
>W2310010492
BMLD01000006
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
276578
276652
+
Val
TAC
[ENA]
¡û
>C161049350
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1822610
1822684
+
Val
TAC
[Ensembl]
¡û
>C161053926
CP013244
Alphaproteobacteria
Candidatus Viadribacter manganicus A272 [CP013244]
182744
182670
-
Val
TAC
[Ensembl]
¡û
>W121086792
AKKF01000306
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
2630
2556
-
Val
TAC
[ENA]
¡û
>W1610725824
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
214964
214890
-
Val
TAC
[ENA]
¡û
>W1610726509
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
156266
156340
+
Val
TAC
[ENA]
¡û
>W1610726809
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
80904
80978
+
Val
TAC
[ENA]
¡û
>W1610728307
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
176938
177012
+
Val
TAC
[ENA]
¡û
>W1610728358
LMHD01000010
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
65275
65201
-
Val
TAC
[ENA]
¡û
>W1610759808
LNIY01000002
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
10599
10673
+
Val
TAC
[ENA]
¡û
>W1710565874
FORN01000080
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
6184
6258
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK