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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382443 (17 seq.)
>w027431
ABCE01000009
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
111316
111242
-
Gly
GCC
[ENA]
¡û
>WENV180104184
OAPB01113406
[OAPB] marine metagenome; Sterile flask
133
205
+
Gly
GCC
[ENA]
¡û
>WENV180695207
OCZS013175684
[OCZS] soil metagenome; soil
71
142
+
Gly
GCC
[ENA]
¡û
>WENV170121179
CENL01054706
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
370
+
Gly
GCC
[ENA]
¡û
>WENV170121259
CENL01089805
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
534
606
+
Gly
GCC
[ENA]
¡û
>WENV170928615
MDTG01136543
[MDTG] marine metagenome; seawater
5033
4961
-
Gly
GCC
[ENA]
¡û
>W2011588325
SIHI01000001
Planctomycetota
Planctomycetes bacterium KOR42 [SIHI]
37337
37409
+
Gly
GCC
[ENA]
¡û
>W2011610118
SJPG01000001
Planctomycetota
Planctomycetes bacterium Pan54 [SJPG]
5526676
5526748
+
Gly
GCC
[ENA]
¡û
>W2012143770
VTSR01000022
Planctomycetota
Gimesia sp. JC646 [VTSR]
50718
50646
-
Gly
GCC
[ENA]
¡û
>C241044035
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
4717448
4717520
+
Gly
GCC
-
¡û
>C241044484
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
4849777
4849849
+
Gly
GCC
-
¡û
>C241044553
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
4717519
4717591
+
Gly
GCC
-
¡û
>C241069942
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
4873224
4873296
+
Gly
GCC
-
¡û
>C241083580
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
7192712
7192640
-
Gly
GCC
-
¡û
>C241083655
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
2826009
2825937
-
Gly
GCC
-
¡û
>C11116915
CP002546
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [CP002546]
354099
354027
-
Gly
GCC
[Ensembl]
¡û
>W11138332
AEIC01000016
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [AEIC]
70145
70073
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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