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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382609 (34 seq.)
>W131222654
AUBL01000015
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
15238
15310
+
Gln
TTG
[ENA]
¡û
>WENV180697838
ODDE01006732
[ODDE] human metagenome; G_DNA_Supragingival plaque
1029
957
-
Gln
TTG
[ENA]
¡û
>WENV180717845
ODGE01004818
[ODGE] human metagenome; G_DNA_Buccal mucosa
568
496
-
Gln
TTG
[ENA]
¡û
>WENV180721543
ODGL01001770
[ODGL] human metagenome; G_DNA_Subgingival plaque
1210
1282
+
Gln
TTG
[ENA]
¡û
>WENV180722117
ODGL01096845
[ODGL] human metagenome; G_DNA_Subgingival plaque
124
52
-
Gln
TTG
[ENA]
¡û
>WENV180734093
ODGZ01002516
[ODGZ] human metagenome; G_DNA_Supragingival plaque
7057
6984
-
Gln
TTG
[ENA]
¡û
>WENV180734586
ODGZ01013629
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2119
2192
+
Gln
TTG
[ENA]
¡û
>WENV180755008
ODHU01007456
[ODHU] human metagenome; G_DNA_Supragingival plaque
972
900
-
Gln
TTG
[ENA]
¡û
>WENV180764575
ODIB01000055
[ODIB] human metagenome; G_DNA_Supragingival plaque
65697
65624
-
Gln
TTG
[ENA]
¡û
>WENV180778461
ODIM01007915
[ODIM] human metagenome; G_DNA_Supragingival plaque
1174
1247
+
Gln
TTG
[ENA]
¡û
>WENV180786913
ODIS01000449
[ODIS] human metagenome; G_DNA_Supragingival plaque
17055
16983
-
Gln
TTG
[ENA]
¡û
>WENV180796718
ODJB01010846
[ODJB] human metagenome; G_DNA_Supragingival plaque
1220
1147
-
Gln
TTG
[ENA]
¡û
>WENV180796936
ODJB01020758
[ODJB] human metagenome; G_DNA_Supragingival plaque
612
684
+
Gln
TTG
[ENA]
¡û
>WENV180800983
ODJD01004198
[ODJD] human metagenome; G_DNA_Supragingival plaque
2664
2591
-
Gln
TTG
[ENA]
¡û
>WENV180808280
ODJJ01015194
[ODJJ] human metagenome; G_DNA_Buccal mucosa
143
215
+
Gln
TTG
[ENA]
¡û
>WENV180822293
ODJT01000229
[ODJT] human metagenome; G_DNA_Supragingival plaque
13676
13603
-
Gln
TTG
[ENA]
¡û
>WENV180881515
ODMA01001899
[ODMA] human metagenome; G_DNA_Supragingival plaque
2088
2161
+
Gln
TTG
[ENA]
¡û
>WENV180888769
ODMN01003420
[ODMN] human metagenome; G_DNA_Supragingival plaque
3499
3426
-
Gln
TTG
[ENA]
¡û
>WENV180934076
ODTR01019674
[ODTR] human metagenome; G_DNA_Supragingival plaque
59
132
+
Gln
TTG
[ENA]
¡û
>WENV180973436
ODUW01005694
[ODUW] human metagenome; G_DNA_Supragingival plaque
2117
2190
+
Gln
TTG
[ENA]
¡û
>WENV180980933
ODVE01003935
[ODVE] human metagenome; G_DNA_Supragingival plaque
2116
2189
+
Gln
TTG
[ENA]
¡û
>WENV180987040
ODVK01003669
[ODVK] human metagenome; G_DNA_Supragingival plaque
2115
2188
+
Gln
TTG
[ENA]
¡û
>WENV180999055
ODVT01005163
[ODVT] human metagenome; G_DNA_Buccal mucosa
2112
2185
+
Gln
TTG
[ENA]
¡û
>WENV181050228
ODYD01009370
[ODYD] human metagenome; G_DNA_Supragingival plaque
1008
935
-
Gln
TTG
[ENA]
¡û
>WENV181067114
ODZI01006898
[ODZI] human metagenome; G_DNA_Supragingival plaque
2677
2604
-
Gln
TTG
[ENA]
¡û
>WENV181143597
OEHM01002661
[OEHM] human metagenome; G_DNA_Supragingival plaque
2114
2187
+
Gln
TTG
[ENA]
¡û
>WENV183510875
OMHS01007202
[OMHS] human oral metagenome; human oral
313
385
+
Gln
TTG
[ENA]
¡û
>C181148273
CP027236
Actinomycetota
Actinomyces sp. oral taxon 897 F0631 [CP027236]
2129980
2129908
-
Gln
TTG
-
¡û
>C191208605
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
23945
24017
+
Gln
TTG
-
¡û
>C191211573
LR134477
Actinomycetota
Actinomyces viscosus NCTC10951 [LR134477]
3123858
3123930
+
Gln
TTG
-
¡û
>W141779307
JONS01000033
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
9818
9744
-
Gln
TTG
[ENA]
¡û
>C211237601
CP067336
Actinomycetota
Actinomyces sp. HMT897 [CP067336]
1545325
1545253
-
Gln
TTG
-
¡û
>C241253351
CP124548
Actinomycetota
Actinomyces israelii F0345 [CP124548]
703775
703848
+
Gln
TTG
-
¡û
>W11171095
AFQC01000058
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
36791
36717
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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