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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382785 (31 seq.)
>W1711136361
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
387936
387862
-
Thr
GGT
[ENA]
¡û
>C171057195
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
476835
476909
+
Thr
GGT
-
¡û
>C171118600
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
404473
404547
+
Thr
GGT
-
¡û
>WENV180242539
OBDI01282045
[OBDI] metagenome; diffuse fluid
95
169
+
Thr
GGT
[ENA]
¡û
>WENV180317045
OBKJ01009838
[OBKJ] metagenome; hydrothermal vent
294
368
+
Thr
GGT
[ENA]
¡û
>WENV180882613
ODMC01000215
[ODMC] human metagenome; G_DNA_Tongue dorsum
51762
51688
-
Thr
GGT
[ENA]
¡û
>WENV180897804
ODNI01084971
[ODNI] human metagenome; G_DNA_Tongue dorsum
209
135
-
Thr
GGT
[ENA]
¡û
>WENV180930706
ODTP01000195
[ODTP] human metagenome; G_DNA_Tongue dorsum
163
237
+
Thr
GGT
[ENA]
¡û
>WENV181113636
OEEL01053684
[OEEL] human metagenome; G_DNA_Tongue dorsum
139
213
+
Thr
GGT
[ENA]
¡û
>WENV181225543
OFDI01007214
[OFDI] metagenome; hydrothermal vent
100
174
+
Thr
GGT
[ENA]
¡û
>WENV170635420
JDSF01015195
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
411
337
-
Thr
GGT
[ENA]
¡û
>WENV170658410
JTFP01106822
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
162
236
+
Thr
GGT
[ENA]
¡û
>W141451873
JFBL01000011
Campylobacterota
Sulfurospirillum arcachonense DSM 9755 [JFBL]
22771
22845
+
Thr
GGT
[ENA]
¡û
>C181078323
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
401446
401520
+
Thr
GGT
-
¡û
>W09110090
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
416272
416198
-
Thr
GGT
[ENA]
¡û
>W141814436
JQGK01000004
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
39731
39805
+
Thr
GGT
[ENA]
¡û
>C151018371
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
452214
452288
+
Thr
GGT
[Ensembl]
¡û
>ENV09001709
ACQI01003258
Hydrothermal vent metagenome LCHCB.C1
1277
1351
+
Thr
GGT
[ENA]
¡û
>W1510014732
BBQE01000006
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
133486
133412
-
Thr
GGT
[ENA]
¡û
>W1510014750
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
391942
392016
+
Thr
GGT
[ENA]
¡û
>C241048699
CP039734
Campylobacterota
Sulfurospirillum diekertiae ACSDCE [CP039734]
378042
378116
+
Thr
GGT
-
¡û
>C241070528
CP042966
Campylobacterota
Sulfurospirillum multivorans N [CP042966]
456157
456231
+
Thr
GGT
-
¡û
>C241096850
CP045453
Campylobacterota
Sulfurospirillum diekertiae ACSTCE [CP045453]
363607
363681
+
Thr
GGT
-
¡û
>C241234388
CP118373
Campylobacterota
Sulfurospirillum sp. 'SP' [CP118373]
414714
414788
+
Thr
GGT
-
¡û
>C241356590
CP140614
Campylobacterota
Sulfurospirillum sp. 1612 [CP140614]
522911
522985
+
Thr
GGT
-
¡û
>C10111310
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
325349
325423
+
Thr
GGT
[Ensembl]
¡û
>W1511365453
JSEC01000001
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
352014
352088
+
Thr
GGT
[ENA]
¡û
>C121011160
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
349366
349440
+
Thr
GGT
[Ensembl]
¡û
>C161001355
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
409758
409832
+
Thr
GGT
-
¡û
>C161001420
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2355264
2355190
-
Thr
GGT
-
¡û
>W1610947481
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
387936
387862
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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