This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.382945 (14 seq.)
>C171074546
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1315150
1315224
+
Thr
GGT
-
¡û
>C171074598
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1351667
1351741
+
Thr
GGT
-
¡û
>C171074650
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1311680
1311754
+
Thr
GGT
-
¡û
>C171074702
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1307361
1307435
+
Thr
GGT
-
¡û
>C171074754
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1351668
1351742
+
Thr
GGT
-
¡û
>C171074806
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1315209
1315283
+
Thr
GGT
-
¡û
>C009828
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1315179
1315253
+
Thr
GGT
[Ensembl]
¡û
>WENV170130784
CENR01029372
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1181
1107
-
Thr
GGT
[ENA]
¡û
>WENV170276690
CERO01010020
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
502
576
+
Thr
GGT
[ENA]
¡û
>C151004018
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1311789
1311863
+
Thr
GGT
[Ensembl]
¡û
>C151004093
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2158934
2158860
-
Thr
GGT
[Ensembl]
¡û
>C151004145
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2100603
2100529
-
Thr
GGT
[Ensembl]
¡û
>W2010605011
JABKAT010000006
Alphaproteobacteria
Acetobacteraceae bacterium PAMC 26568 [JABKAT]
2728
2802
+
Thr
GGT
[ENA]
¡û
>C241158829
CP053708
Alphaproteobacteria
Lichenicola cladoniae PAMC 26569 [CP053708]
2230609
2230535
-
Thr
GGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK