This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383061 (24 seq.)
>W131178640
ARLS01000036
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
98055
98129
+
Thr
GGT
[ENA]
¡û
>WENV180343399
OBLK01011152
[OBLK] soil metagenome; Clay
512
438
-
Thr
GGT
[ENA]
¡û
>WENV181413798
OGCK01139877
[OGCK] hot springs metagenome; hot spring sediment
276
202
-
Thr
GGT
[ENA]
¡û
>W141169915
AXWT01000017
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
116682
116756
+
Thr
GGT
[ENA]
¡û
>W141220842
AZYF01000777
Deinococcota
Deinococcus pimensis DSM 21231 [AZYF]
1350
1276
-
Thr
GGT
[ENA]
¡û
>WENV170244042
CEQO01284133
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
192
266
+
Thr
GGT
[ENA]
¡û
>WENV170248272
CEQQ01113458
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
217
143
-
Thr
GGT
[ENA]
¡û
>WENV170573707
FLYL01019890
[FLYL] hot springs metagenome; Sediment
60
134
+
Thr
GGT
[ENA]
¡û
>WENV170958727
MKWU01001819
[MKWU] sponge metagenome;
281
207
-
Thr
GGT
[ENA]
¡û
>C181134321
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
687188
687114
-
Thr
GGT
-
¡û
>W141711944
JMQF01000031
Deinococcota
Deinococcus sp. RL [JMQF]
102011
102085
+
Thr
GGT
[ENA]
¡û
>W141816923
JQKG01000019
Deinococcota
Deinococcus misasensis DSM 22328 [JQKG]
469
395
-
Thr
GGT
[ENA]
¡û
>W1911597499
PNOR01000040
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
499
425
-
Thr
GGT
[ENA]
¡û
>W1810003531
BFAG01000003
Deinococcota
Deinococcus aerius TR0125 [BFAG]
401312
401386
+
Thr
GGT
[ENA]
¡û
>W1810671609
QJSX01000009
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
203017
203091
+
Thr
GGT
[ENA]
¡û
>W2010102677
BJXB01000018
Deinococcota
Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 [BJXB]
201
127
-
Thr
GGT
[ENA]
¡û
>W2010699988
JACHFN010000002
Deinococcota
Deinococcus budaensis DSM 101791 [JACHFN]
411361
411435
+
Thr
GGT
[ENA]
¡û
>W2011206398
PNOR01000040
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
499
425
-
Thr
GGT
[ENA]
¡û
>W2012232396
WBSL01000001
Deinococcota
Deinococcus sp. SDU3-2 [WBSL]
322
248
-
Thr
GGT
[ENA]
¡û
>W2110033723
BMOD01000001
Deinococcota
Deinococcus roseus JCM 14370 [BMOD]
602740
602814
+
Thr
GGT
[ENA]
¡û
>C241310846
CP133611
Deinococcota
Truepera radiovictrix CIP 108686 [CP133611]
1584785
1584859
+
Thr
GGT
-
¡û
>C10113741
CP002049
Deinococcota
Truepera radiovictrix DSM 17093 [CP002049]
2713042
2712968
-
Thr
GGT
[Ensembl]
¡û
>C11107157
CP002454
Deinococcota
Deinococcus maricopensis DSM 21211 [CP002454]
923136
923062
-
Thr
GGT
[Ensembl]
¡û
>C131003564
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
997307
997381
+
Thr
GGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK