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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.38316 (21 seq.)
>W131213803
ATTH01000001
Rhodothermota
Salisaeta longa DSM 21114 [ATTH]
2322611
2322523
-
Leu
GAG
[ENA]
¡û
>W131182118
ARQC01000012
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
3243
3331
+
Leu
GAG
[ENA]
¡û
>C024117
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2877516
2877604
+
Leu
GAG
[Ensembl]
¡û
>WENV180318515
OBKM01001511
[OBKM] metagenome; water
9105
9019
-
Leu
GAG
[ENA]
¢þ
>WENV170008858
APHM01010997
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
932
844
-
Leu
GAG
[ENA]
¢þ
>C181192106
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2922252
2922339
+
Leu
GAG
-
¡û
>C191072370
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
3093675
3093762
+
Leu
GAG
-
¡û
>C191072414
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2913570
2913657
+
Leu
GAG
-
¡û
>C191072460
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2992954
2993040
+
Leu
GAG
-
¡û
>C191072504
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2853795
2853882
+
Leu
GAG
-
¡û
>C191072549
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2942922
2943008
+
Leu
GAG
-
¡û
>W1910785971
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
2408473
2408387
-
Leu
GAG
[ENA]
¡û
>W1910870036
NCQX01000006
Rhodothermota
Salinibacter ruber SP273 [NCQX]
8363
8276
-
Leu
GAG
[ENA]
¡û
>W1910870094
NCQY01000020
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
398325
398239
-
Leu
GAG
[ENA]
¡û
>W1910870142
NCQZ01000029
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
13125
13039
-
Leu
GAG
[ENA]
¡û
>W1910870205
NCRA01000062
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
6723
6809
+
Leu
GAG
[ENA]
¡û
>W1910870214
NCRB01000007
Rhodothermota
Salinivenus iranica CB7 [NCRB]
62339
62251
-
Leu
GAG
[ENA]
¡û
>W1910870270
NCRC01000011
Rhodothermota
Salinivenus lutea DBO [NCRC]
112511
112425
-
Leu
GAG
[ENA]
¡û
>W1810053815
PDEP01000003
Rhodothermota
Longimonas halophila KCTC 42399 [PDEP]
19415
19329
-
Leu
GAG
[ENA]
¡û
>W1810053860
PDEQ01000002
Rhodothermota
Longibacter salinarum KCTC 52045 [PDEQ]
287537
287451
-
Leu
GAG
[ENA]
¡û
>C131018236
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2955828
2955916
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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