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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383323 (10 seq.)
>C181143162
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1040935
1041008
+
Gln
CTG
-
¡û
>C211059776
CP043431
Bacillota
Weissella koreensis SK [CP043431]
999585
999658
+
Gln
CTG
-
¡û
>C211137943
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
983358
983285
-
Gln
CTG
-
¡û
>C241138630
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1483017
1482944
-
Gln
CTG
-
¡û
>C241378277
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
1018921
1018994
+
Gln
CTG
-
¡û
>WENV11100356
AEKF01000107
Food metagenome, Jonggazip commercial cabbage kimchi
3455
3528
+
Gln
CTG
[ENA]
¡û
>C11123746
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
962783
962856
+
Gln
CTG
[Ensembl]
¡û
>W121082013
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
34700
34773
+
Gln
CTG
[ENA]
¡û
>W1610528863
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
93713
93787
+
Gln
CTG
[ENA]
¡û
>W1710630453
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
93713
93787
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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