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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383324 (10 seq.)
>C181143183
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1185361
1185290
-
Arg
CCG
-
¡û
>C211059797
CP043431
Bacillota
Weissella koreensis SK [CP043431]
1144012
1143941
-
Arg
CCG
-
¡û
>C211137953
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
337372
337301
-
Arg
CCG
-
¡û
>C241138614
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1316865
1316936
+
Arg
CCG
-
¡û
>C241378298
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
1163344
1163273
-
Arg
CCG
-
¡û
>WENV11100285
AEKF01000016
Food metagenome, Jonggazip commercial cabbage kimchi
40236
40165
-
Arg
CCG
[ENA]
¡û
>C11123767
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1107142
1107071
-
Arg
CCG
[Ensembl]
¡û
>W121082034
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
179110
179039
-
Arg
CCG
[ENA]
¡û
>W1610528842
JQBP01000002
Bacillota
Weissella kandleri [JQBP]
274395
274469
+
Arg
CCG
[ENA]
¡û
>W1710630432
JQBP01000002
Bacillota
Weissella kandleri [JQBP]
274395
274469
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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