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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383325 (7 seq.)
>C181143188
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
740337
740264
-
Gln
TTG
-
¡û
>C211059802
CP043431
Bacillota
Weissella koreensis SK [CP043431]
697998
697925
-
Gln
TTG
-
¡û
>C241138601
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
205355
205429
+
Gln
TTG
-
¡û
>C241378303
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
719253
719180
-
Gln
TTG
-
¡û
>WENV11100291
AEKF01000023
Food metagenome, Jonggazip commercial cabbage kimchi
36338
36411
+
Gln
TTG
[ENA]
¡û
>C11123772
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
690733
690660
-
Gln
TTG
[Ensembl]
¡û
>W121082050
AKGG01000016
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
271878
271805
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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