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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.38478 (19 seq.)
>W1711724068
MTPV01000034
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
36509
36597
+
Ser
TGA
[ENA]
¡û
>WENV180016379
FSUT01000391
[FSUT] metagenome; soil
3567
3655
+
Ser
TGA
[ENA]
¡û
>WENV180018456
FSZH01000455
[FSZH] metagenome; soil
2546
2634
+
Ser
TGA
[ENA]
¡û
>WENV180019644
FTCF01000200
[FTCF] metagenome; soil
600
510
-
Ser
TGA
[ENA]
¡û
>WENV180025603
FTIP01111166
[FTIP] metagenome; soil
133
45
-
Ser
TGA
[ENA]
¡û
>WENV180030115
FTJL01177453
[FTJL] metagenome; soil
377
289
-
Ser
TGA
[ENA]
¡û
>W141065989
AQRI01000008
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
210574
210486
-
Ser
TGA
[ENA]
¡û
>W2010698310
JACHEE010000011
Actinomycetota
Arthrobacter sp. AZCC_0090 [JACHEE]
32779
32867
+
Ser
TGA
[ENA]
¡û
>W2011639647
SMRU01000048
Actinomycetota
Arthrobacter sp. JH1-1 [SMRU]
25924
26012
+
Ser
TGA
[ENA]
¡û
>W2110603321
JAHHIO010000027
Actinomycetota
Arthrobacter sp. GN70 [JAHHIO]
30862
30774
-
Ser
TGA
[ENA]
¡û
>C211025208
AP024651
Actinomycetota
Arthrobacter sp. StoSoilB20 [AP024651]
936535
936445
-
Ser
TGA
-
¡û
>W1510018512
BBUD01000518
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
3050
2962
-
Ser
TGA
[ENA]
¡û
>C231193796
CP084560
Actinomycetota
Arthrobacter sp. FW306-2-2C-D06B [CP084560]
637499
637411
-
Ser
TGA
-
¡û
>C231527695
CP110114
Actinomycetota
Arthrobacter sp. YA7-1 [CP110114]
612051
611963
-
Ser
TGA
-
¡û
>C231548412
CP113343
Actinomycetota
Arthrobacter sp. MMS18-M83 [CP113343]
2256818
2256906
+
Ser
TGA
-
¡û
>W2130031409
JAFNLL010000029
Actinomycetota
Arthrobacter sp. PO-11 [JAFNLL]
41990
42079
+
Ser
TGA
[ENA]
¡û
>C161001311
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
1868315
1868403
+
Ser
TGA
-
¡û
>W1610112455
CZJW01000055
Actinomycetota
Kocuria rhizophila [CZJW]
38528
38618
+
Ser
TGA
[ENA]
¡û
>W1710115159
CZJW01000055
Actinomycetota
Kocuria rhizophila [CZJW]
38528
38618
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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