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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3850 (28 seq.)
>W1711254797
LYRP01000012
Gammaproteobacteria
Mangrovibacter phragmitis MP23 [LYRP]
229246
229152
-
SeC(p)
TCA
[ENA]
¡û
>W141057868
AOXZ01000131
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Soerenga str. 695 [AOXZ]
63157
63063
-
SeC(p)
TCA
[ENA]
¡û
>WENV181798931
OGRX01002909
[OGRX] human gut metagenome; fecal sample 2 from infant 8
896
802
-
SeC
TCA
[ENA]
¢þ
>WENV181801670
OGSC01000002
[OGSC] human gut metagenome; fecal sample 8 from infant 5
420084
420178
+
SeC
TCA
[ENA]
¢þ
>WENV181806506
OGSL01000029
[OGSL] human gut metagenome; fecal sample 6 from infant 5
429
523
+
SeC
TCA
[ENA]
¢þ
>WENV181837315
OGVK01020206
[OGVK] freshwater metagenome; freshwater
663
757
+
SeC
TCA
[ENA]
¢þ
>WENV182395170
OIEK01002649
[OIEK] human gut metagenome; human gut
863
769
-
SeC
TCA
[ENA]
¢þ
>WENV182863986
OKPX01000217
[OKPX] human gut metagenome; human gut
27372
27466
+
SeC
TCA
[ENA]
¢þ
>WENV182951531
OKVU01001128
[OKVU] human gut metagenome; human gut
1891
1797
-
SeC
TCA
[ENA]
¢þ
>WENV182953473
OKVY01001237
[OKVY] human gut metagenome; human gut
2662
2568
-
SeC
TCA
[ENA]
¢þ
>WENV183731048
PJTS01005599
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1644
1738
+
SeC
TCA
[ENA]
¢þ
>C181128765
CP026192
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH2 [CP026192]
1389840
1389746
-
SeC
TCA
-
¡û
>C181128872
CP026197
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH3 [CP026197]
845545
845639
+
SeC
TCA
-
¡û
>C181147842
CP027225
Gammaproteobacteria
Phytobacter sp. SCO41 [CP027225]
84328
84234
-
SeC
TCA
-
¡û
>C191004946
AP018756
Gammaproteobacteria
Phytobacter sp. MRY16-398 [AP018756]
93606
93512
-
Sec
TCA
-
¡û
>C191196384
LR134138
Gammaproteobacteria
Kluyvera intermedia NCTC12125 [LR134138]
3612985
3612891
-
Sec
TCA
-
¡û
>W141619832
JJMI01000027
Gammaproteobacteria
Mangrovibacter sp. MFB070 [JJMI]
28605
28699
+
SeC(p)
TCA
[ENA]
¡û
>W1810302879
PTOQ01000033
Gammaproteobacteria
Cronobacter sakazakii MOD1_777122 [PTOQ]
12932
13026
+
Sec
TCA
[ENA]
¡û
>W1810609044
QGTS01000010
Gammaproteobacteria
Mangrovibacter plantisponsor DSM 19579 [QGTS]
137053
137147
+
Sec
TCA
[ENA]
¡û
>W1810658519
QJJI01000035
Gammaproteobacteria
Grimontella sp. AG753 [QJJI]
4428
4334
-
Sec
TCA
[ENA]
¡û
>W1810893201
QUVM01000005
Gammaproteobacteria
Salmonella enterica CFSAN071990 [QUVM]
349426
349520
+
Sec
TCA
[ENA]
¡û
>W1511499395
JXAF01000037
Gammaproteobacteria
Enterobacter sp. Bisph2 [JXAF]
129270
129176
-
SeC
TCA
[ENA]
¡û
>W1511698557
LGHZ01000002
Gammaproteobacteria
Kluyvera genomosp. 1 L2 [LGHZ]
4560
4654
+
SeC
TCA
[ENA]
¡û
>W1610070713
BCTM01000007
Gammaproteobacteria
Kluyvera cryocrescens NBRC 102467 [BCTM]
142076
141982
-
SeC(p)
TCA
[ENA]
¡û
>W1610076412
BCYS01000013
Gammaproteobacteria
Kluyvera intermedia NBRC 102594 = ATCC 33110 [BCYS]
123949
124043
+
SeC(p)
TCA
[ENA]
¡û
>W1611018378
LYRP01000012
Gammaproteobacteria
Mangrovibacter phragmitis MP23 [LYRP]
229246
229152
-
SeC(p)
TCA
[ENA]
¡û
>W1710068035
BCTM01000007
Gammaproteobacteria
Kluyvera cryocrescens NBRC 102467 [BCTM]
142076
141982
-
SeC(p)
TCA
[ENA]
¡û
>W1710560001
FONB01000004
Gammaproteobacteria
Phytobacter palmae S29 [FONB]
640
546
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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