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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.385404 (116 seq.)
>W1710785603
LJHZ01000099
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
9119
9193
+
Glu
CTC
[ENA]
¡û
>W1710856900
LLZS01000006
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
296986
296912
-
Glu
CTC
[ENA]
¡û
>W1710912675
LNRU01000010
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
13600
13526
-
Glu
CTC
[ENA]
¡û
>W1710912721
LNRV01000029
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
13600
13526
-
Glu
CTC
[ENA]
¡û
>W1710912764
LNRW01000028
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
44029
44103
+
Glu
CTC
[ENA]
¡û
>W1710912809
LNRX01000029
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
13619
13545
-
Glu
CTC
[ENA]
¡û
>W1710912837
LNRY01000008
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
154433
154507
+
Glu
CTC
[ENA]
¡û
>W1710912901
LNRZ01000012
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
66863
66937
+
Glu
CTC
[ENA]
¡û
>W1710912926
LNSA01000006
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
14778
14704
-
Glu
CTC
[ENA]
¡û
>W1710912951
LNSB01000001
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
26370
26296
-
Glu
CTC
[ENA]
¡û
>W1710913091
LNSE01000002
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
256904
256830
-
Glu
CTC
[ENA]
¡û
>W1710913136
LNSF01000002
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
466304
466230
-
Glu
CTC
[ENA]
¡û
>W1710913181
LNSG01000002
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
466304
466230
-
Glu
CTC
[ENA]
¡û
>W1710913266
LNSI01000001
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
85337
85411
+
Glu
CTC
[ENA]
¡û
>W1710927017
LOEX01000052
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
18163
18089
-
Glu
CTC
[ENA]
¡û
>W1711051705
LRSE01000007
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
116455
116529
+
Glu
CTC
[ENA]
¡û
>W1711072885
LSIA01000020
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
47962
47888
-
Glu
CTC
[ENA]
¡û
>W1711089901
LTAB01000025
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
61759
61833
+
Glu
CTC
[ENA]
¡û
>W1711227780
LXVX01000012
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
284896
284822
-
Glu
CTC
[ENA]
¡û
>W1711250036
LYMJ01000014
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
115391
115317
-
Glu
CTC
[ENA]
¡û
>W1711253314
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
897333
897259
-
Glu
CTC
[ENA]
¡û
>W1711259800
LYVN01000160
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
4552
4478
-
Glu
CTC
[ENA]
¡û
>W1711261660
LYWY01000018
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
103590
103664
+
Glu
CTC
[ENA]
¡û
>W1711261748
LYWZ01000027
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
135659
135733
+
Glu
CTC
[ENA]
¡û
>W1711386373
MEFG01000021
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
52316
52390
+
Glu
CTC
[ENA]
¡û
>W1711386422
MEFH01000081
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
22582
22656
+
Glu
CTC
[ENA]
¡û
>W1711434819
MINO01000021
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
54152
54226
+
Glu
CTC
[ENA]
¡û
>W1711506361
MKWI01000016
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
318619
318545
-
Glu
CTC
[ENA]
¡û
>C171019725
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1018734
1018660
-
Glu
CTC
-
¡û
>WENV180038970
LLBY010016799
[LLBY] soil metagenome; soil from tomato rhizosphere
3205
3279
+
Glu
CTC
[ENA]
¢þ
>WENV180040741
LLBZ010010250
[LLBZ] soil metagenome; soil from tomato rhizosphere
15407
15333
-
Glu
CTC
[ENA]
¢þ
>W141076314
ATDP01000072
Alphaproteobacteria
Sphingobium lactosutens DS20 [ATDP]
57460
57534
+
Glu
CTC
[ENA]
¡û
>W141078471
ATIB01000084
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
15053
14979
-
Glu
CTC
[ENA]
¡û
>WENV181222766
OFDC01000236
[OFDC] hot springs metagenome; Water
129
203
+
Glu
CTC
[ENA]
¢þ
>WENV181222773
OFDC01000239
[OFDC] hot springs metagenome; Water
35834
35908
+
Glu
CTC
[ENA]
¢þ
>W141231016
BATN01000001
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
62311
62237
-
Glu
CTC
[ENA]
¡û
>W141285078
JANF02000047
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
28901
28975
+
Glu
CTC
[ENA]
¡û
>ENV08000107
ABLW01025087
viral fraction from Gulf of Mexico
115
41
-
Glu
CTC
[ENA]
¡û
>ENV08000253
ABLY01120107
viral fraction from Arctic Ocean
94
20
-
Glu
CTC
[ENA]
¡û
>WENV183733972
PJTZ01000010
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
288567
288641
+
Glu
CTC
[ENA]
¢þ
>WENV183738545
PJUE01000015
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
151334
151260
-
Glu
CTC
[ENA]
¢þ
>WENV183739606
PJUE01039590
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
186
112
-
Glu
CTC
[ENA]
¢þ
>WENV183749654
PPFU01196893
[PPFU] hypolithon metagenome; Antarctic Hypolithon
7789
7863
+
Glu
CTC
[ENA]
¢þ
>WENV170193606
CEPH01158648
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1000
926
-
Glu
CTC
[ENA]
¢þ
>W141400552
JDRU02000560
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
11687
11613
-
Glu
CTC
[ENA]
¡û
>WENV170309391
CESL01136092
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
216
142
-
Glu
CTC
[ENA]
¢þ
>WENV170373703
CETT01012340
[CETT] marine metagenome genome assembly TARA_110_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
366
440
+
Glu
CTC
[ENA]
¢þ
>WENV170578091
FSSH01015013
[FSSH] freshwater metagenome; drinking water
677
751
+
Glu
CTC
[ENA]
¢þ
>WENV170596680
FUIF01009205
[FUIF] marine metagenome; marine
8342
8416
+
Glu
CTC
[ENA]
¢þ
>WENV170596682
FUIF01009217
[FUIF] marine metagenome; marine
938
1012
+
Glu
CTC
[ENA]
¢þ
>WENV170727701
LULE01001370
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
2413
2487
+
Glu
CTC
[ENA]
¢þ
>WENV171003508
NNBU01000230
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
62562
62488
-
Glu
CTC
[ENA]
¢þ
>WENV171003923
NNBV01004670
[NNBV] plant metagenome; symbiotic tissue sample KVS11
62462
62536
+
Glu
CTC
[ENA]
¢þ
>W141484895
JFYY01000011
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
57573
57499
-
Glu
CTC
[ENA]
¡û
>C191003776
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 [AP018664]
1679132
1679206
+
Glu
CTC
-
¡û
>C191155748
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
847891
847965
+
Glu
CTC
-
¡û
>C191170973
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
3512366
3512292
-
Glu
CTC
-
¡û
>W09100330
AAAV03000005
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
73575
73649
+
Glu
CTC
[ENA]
¡û
>W09102958
AAIP01000009
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
48100
48026
-
Glu
CTC
[ENA]
¡û
>W141726125
JNAC01000024
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
119762
119688
-
Glu
CTC
[ENA]
¡û
>W1910649287
LXYF01000026
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
35828
35754
-
Glu
CTC
[ENA]
¡û
>W1910822172
MWMO01000015
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
44535
44461
-
Glu
CTC
[ENA]
¡û
>W1910889696
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
330263
330337
+
Glu
CTC
[ENA]
¡û
>W1910934257
NIWD01000009
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
565798
565872
+
Glu
CTC
[ENA]
¡û
>W1911495399
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
1716504
1716578
+
Glu
CTC
[ENA]
¡û
>W1810195672
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
632075
632149
+
Glu
CTC
[ENA]
¡û
>C151082939
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
387091
387017
-
Glu
CTC
-
¡û
>W1510015802
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
2229
2155
-
Glu
CTC
[ENA]
¡û
>W10126769
AEDK01000002
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
960710
960636
-
Glu
CTC
[ENA]
¡û
>C10111665
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2104799
2104873
+
Glu
CTC
[Ensembl]
¡û
>W1510757079
JACV01000020
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
17987
18061
+
Glu
CTC
[ENA]
¡û
>W1511221180
JNFC01000050
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
6760
6834
+
Glu
CTC
[ENA]
¡û
>W1511356990
JRVC01000002
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
202993
203067
+
Glu
CTC
[ENA]
¡û
>C11119812
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
339182
339108
-
Glu
CTC
[Ensembl]
¡û
>C11121292
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6 [AP012222]
1563660
1563586
-
Glu
CTC
[Ensembl]
¡û
>W11134030
AEDK01000002
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
960710
960636
-
Glu
CTC
[ENA]
¡û
>W1511590514
LBHB01000001
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
884424
884498
+
Glu
CTC
[ENA]
¡û
>W1511646481
LECE01000072
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
24102
24176
+
Glu
CTC
[ENA]
¡û
>C161021397
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
5059518
5059444
-
Glu
CTC
[Ensembl]
¡û
>C161040526
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
740508
740434
-
Glu
CTC
[Ensembl]
¡û
>C161099954
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
2109566
2109492
-
Glu
CTC
[Ensembl]
¡û
>W121071162
AJXQ01000133
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
6616
6690
+
Glu
CTC
[ENA]
¡û
>W1610076482
BCYT01000021
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
56639
56713
+
Glu
CTC
[ENA]
¡û
>W1610076905
BCZC01000098
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
17869
17943
+
Glu
CTC
[ENA]
¡û
>W1610076941
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
63641
63567
-
Glu
CTC
[ENA]
¡û
>W1610609155
LFVX01000013
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
30188
30262
+
Glu
CTC
[ENA]
¡û
>W1610649409
LJHZ01000099
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
9119
9193
+
Glu
CTC
[ENA]
¡û
>W1610719281
LLZS01000006
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
296986
296912
-
Glu
CTC
[ENA]
¡û
>W1610771034
LNRU01000010
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
13600
13526
-
Glu
CTC
[ENA]
¡û
>W1610771080
LNRV01000029
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
13600
13526
-
Glu
CTC
[ENA]
¡û
>W1610771123
LNRW01000028
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
44029
44103
+
Glu
CTC
[ENA]
¡û
>W1610771168
LNRX01000029
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
13619
13545
-
Glu
CTC
[ENA]
¡û
>W1610771196
LNRY01000008
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
154433
154507
+
Glu
CTC
[ENA]
¡û
>W1610771260
LNRZ01000012
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
66863
66937
+
Glu
CTC
[ENA]
¡û
>W1610771285
LNSA01000006
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
14778
14704
-
Glu
CTC
[ENA]
¡û
>W1610771310
LNSB01000001
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
26370
26296
-
Glu
CTC
[ENA]
¡û
>W1610771450
LNSE01000002
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
256904
256830
-
Glu
CTC
[ENA]
¡û
>W1610771495
LNSF01000002
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
466304
466230
-
Glu
CTC
[ENA]
¡û
>W1610771540
LNSG01000002
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
466304
466230
-
Glu
CTC
[ENA]
¡û
>W1610771625
LNSI01000001
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
85337
85411
+
Glu
CTC
[ENA]
¡û
>W1610784559
LOEX01000052
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
18163
18089
-
Glu
CTC
[ENA]
¡û
>W1610892834
LRSE01000007
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
116455
116529
+
Glu
CTC
[ENA]
¡û
>W1610912145
LSIA01000020
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
47962
47888
-
Glu
CTC
[ENA]
¡û
>W1610924245
LTAB01000025
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
61759
61833
+
Glu
CTC
[ENA]
¡û
>W1611011744
LXVX01000012
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
284896
284822
-
Glu
CTC
[ENA]
¡û
>W1611016918
LYMJ01000014
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
115391
115317
-
Glu
CTC
[ENA]
¡û
>W1611017851
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
897333
897259
-
Glu
CTC
[ENA]
¡û
>W1611023635
LYWY01000018
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
103590
103664
+
Glu
CTC
[ENA]
¡û
>W1611023723
LYWZ01000027
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
135659
135733
+
Glu
CTC
[ENA]
¡û
>W1710074171
BCYT01000021
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
56639
56713
+
Glu
CTC
[ENA]
¡û
>W1710074594
BCZC01000098
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
17869
17943
+
Glu
CTC
[ENA]
¡û
>W1710074630
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
63641
63567
-
Glu
CTC
[ENA]
¡û
>W1710505617
FMTU01000015
Alphaproteobacteria
Sphingobium faniae [FMTU]
3556
3482
-
Glu
CTC
[ENA]
¡û
>W1710507981
FMVR01000003
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
81070
81144
+
Glu
CTC
[ENA]
¡û
>W1710606006
FWXL01000011
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
58966
59040
+
Glu
CTC
[ENA]
¡û
>W1710730442
LFVX01000013
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
30188
30262
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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