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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.38559 (17 seq.)
>W1711352941
MDDP01000010
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
361057
361145
+
Ser
GGA
[ENA]
¡û
>C171036261
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
2170982
2171070
+
Ser
GGA
-
¡û
>W141067184
ARZX01000001
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
454031
453943
-
Ser
GGA
[ENA]
¡û
>WENV170196561
CEPK01053408
[CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3077
2989
-
Ser
GGA
[ENA]
¡û
>WENV170426266
CEUQ01068386
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
366
454
+
Ser
GGA
[ENA]
¡û
>WENV170750516
LUMG01019315
[LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m
612
524
-
Ser
GGA
[ENA]
¡û
>WENV170802284
MDSW01010767
[MDSW] marine metagenome; seawater
4410
4322
-
Ser
GGA
[ENA]
¡û
>WENV170849685
MDTA01100234
[MDTA] marine metagenome; seawater
1384
1472
+
Ser
GGA
[ENA]
¡û
>W1910545622
FZLT01000067
Bacteroidota
Cellulophaga lytica [FZLT]
56322
56410
+
Ser
GGA
[ENA]
¡û
>C151046342
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
2002683
2002771
+
Ser
GGA
[Ensembl]
¡û
>W2010427307
FZLT01000067
Bacteroidota
Cellulophaga lytica [FZLT]
56322
56410
+
Ser
GGA
[ENA]
¡û
>W2012041957
VIRZ01000001
Bacteroidota
Cellulophaga sp. RHA_52 [VIRZ]
317668
317580
-
Ser
GGA
[ENA]
¡û
>W2012352419
WJPK01000006
Bacteroidota
Kriegella sp. EG-1 [WJPK]
131607
131519
-
Ser
GGA
[ENA]
¡û
>C231569555
CP115819
Bacteroidota
Cellulophaga omnivescoria MSK1 [CP115819]
2036163
2036251
+
Ser
GGA
-
¡û
>C241355110
CP140159
Bacteroidota
Cellulophaga lytica DSMZ 7489 [CP140159]
2457127
2457039
-
Ser
GGA
-
¡û
>C11105673
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
2044292
2044380
+
Ser
GGA
[Ensembl]
¡û
>W1710579958
FPIY01000002
Bacteroidota
Cellulophaga fucicola [FPIY]
676237
676149
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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