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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.385600 (48 seq.)
>W1711069515
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
429219
429145
-
Gly
GCC
[ENA]
¡û
>W1711080769
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
339780
339854
+
Gly
GCC
[ENA]
¡û
>W1711080776
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
337303
337229
-
Gly
GCC
[ENA]
¡û
>W1711080829
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
378566
378640
+
Gly
GCC
[ENA]
¡û
>W1711080832
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
376089
376015
-
Gly
GCC
[ENA]
¡û
>W1711143473
LVHI01000012
Actinomycetota
Rhodococcus kyotonensis [LVHI]
267497
267571
+
Gly
GCC
[ENA]
¡û
>W1711143476
LVHI01000012
Actinomycetota
Rhodococcus kyotonensis [LVHI]
267842
267914
+
Gly
GCC
[ENA]
¡û
>WENV181317896
OFJY01042141
[OFJY] marine metagenome; seawater
469
395
-
Gly
GCC
[ENA]
¢þ
>WENV170023662
BCQL01001014
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
5432
5506
+
Gly
GCC
[ENA]
¢þ
>WENV170648806
JRHI01002459
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
11205
11277
+
Gly
GCC
[ENA]
¢þ
>PL191001657
LR134458
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:16 (LR134458)
6620
6692
+
Gly
GCC
[ENA]
¡û
>C181035849
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
2111251
2111179
-
Gly
GCC
-
¡û
>C181067258
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
4669742
4669814
+
Gly
GCC
-
¡û
>C181067284
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
84144
84072
-
Gly
GCC
-
¡û
>C181072172
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
3566572
3566500
-
Gly
GCC
-
¡û
>C181072186
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
105124
105051
-
Gly
GCC
-
¡û
>C191065451
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
1843504
1843576
+
Gly
GCC
-
¡û
>W1910182913
BJNG01000066
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
4542
4470
-
Gly
GCC
[ENA]
¡û
>W1911532677
OIFR01000015
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
1941940
1942012
+
Gly
GCC
[ENA]
¡û
>W1911717754
QQQF01000251
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
111754
111826
+
Gly
GCC
[ENA]
¡û
>W1911717758
QQQF01000251
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
109130
109058
-
Gly
GCC
[ENA]
¡û
>W1810356516
PVMZ01000006
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
163094
163022
-
Gly
GCC
[ENA]
¡û
>W1810356519
PVMZ01000006
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
133875
133803
-
Gly
GCC
[ENA]
¡û
>W1810477658
QAOZ01000006
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
279138
279066
-
Gly
GCC
[ENA]
¡û
>W1810477661
QAOZ01000006
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
278818
278746
-
Gly
GCC
[ENA]
¡û
>W1511307020
JPMV01000002
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
24025
24099
+
Gly
GCC
[ENA]
¡û
>W1511307044
JPMV01000025
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
78751
78823
+
Gly
GCC
[ENA]
¡û
>W1610078817
BDBE01000025
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
311046
310972
-
Gly
GCC
[ENA]
¡û
>W1610079026
BDBI01000024
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
216445
216371
-
Gly
GCC
[ENA]
¡û
>W1610910043
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
429219
429145
-
Gly
GCC
[ENA]
¡û
>W1610919636
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
339780
339854
+
Gly
GCC
[ENA]
¡û
>W1610919643
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
337303
337229
-
Gly
GCC
[ENA]
¡û
>W1610919696
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
378566
378640
+
Gly
GCC
[ENA]
¡û
>W1610919699
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
376089
376015
-
Gly
GCC
[ENA]
¡û
>W1610954481
LVHI01000012
Actinomycetota
Rhodococcus kyotonensis [LVHI]
267497
267571
+
Gly
GCC
[ENA]
¡û
>W1610954484
LVHI01000012
Actinomycetota
Rhodococcus kyotonensis [LVHI]
267842
267914
+
Gly
GCC
[ENA]
¡û
>W1710072242
BCXF01000008
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
28505
28431
-
Gly
GCC
[ENA]
¡û
>W1710072245
BCXF01000008
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
28219
28145
-
Gly
GCC
[ENA]
¡û
>W1710077376
BDBE01000025
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
311046
310972
-
Gly
GCC
[ENA]
¡û
>W1710077585
BDBI01000024
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
216445
216371
-
Gly
GCC
[ENA]
¡û
>W1710517728
FNDN01000007
Actinomycetota
Rhodococcus triatomae [FNDN]
233403
233477
+
Gly
GCC
[ENA]
¡û
>W1710517731
FNDN01000007
Actinomycetota
Rhodococcus triatomae [FNDN]
233689
233763
+
Gly
GCC
[ENA]
¡û
>W1710520290
FNFM01000006
Actinomycetota
Actinopolyspora mzabensis [FNFM]
125130
125056
-
Gly
GCC
[ENA]
¡û
>W1710520292
FNFM01000007
Actinomycetota
Actinopolyspora mzabensis [FNFM]
106784
106712
-
Gly
GCC
[ENA]
¡û
>W1710527709
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
2183586
2183660
+
Gly
GCC
[ENA]
¡û
>W1710527731
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
2181109
2181035
-
Gly
GCC
[ENA]
¡û
>W1710544516
FOAW01000009
Actinomycetota
Rhodococcus maanshanensis [FOAW]
181197
181269
+
Gly
GCC
[ENA]
¡û
>W1710544519
FOAW01000009
Actinomycetota
Rhodococcus maanshanensis [FOAW]
181515
181587
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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