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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.385615 (88 seq.)
>W131179598
ARMN01000018
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
22682
22608
-
Gln
TTG
[ENA]
¡û
>W131179600
ARMN01000018
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
18786
18712
-
Gln
TTG
[ENA]
¡û
>W131179602
ARMN01000018
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
18511
18437
-
Gln
TTG
[ENA]
¡û
>W1711176116
LWFE01000291
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
9107
9181
+
Gln
TTG
[ENA]
¡û
>W1711176425
LWFJ01001154
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
4958
4884
-
Gln
TTG
[ENA]
¡û
>W1711176521
LWFK01002084
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
23835
23909
+
Gln
TTG
[ENA]
¡û
>W1711176616
LWFM01000948
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
5965
5891
-
Gln
TTG
[ENA]
¡û
>W1711176956
LWFS01000036
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
4191
4117
-
Gln
TTG
[ENA]
¡û
>W1711177114
LWFV01000885
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
1624
1550
-
Gln
TTG
[ENA]
¡û
>W1711177276
LWFY01000091
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
467
541
+
Gln
TTG
[ENA]
¡û
>W1711177378
LWFZ01001413
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
15288
15362
+
Gln
TTG
[ENA]
¡û
>W1711177409
LWGA01000732
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
5057
5131
+
Gln
TTG
[ENA]
¡û
>W1711177703
LWGE01001173
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
3148
3222
+
Gln
TTG
[ENA]
¡û
>W1711177801
LWGG01000822
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
4997
5071
+
Gln
TTG
[ENA]
¡û
>W131222081
AUAZ01000012
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
69916
69842
-
Gln
TTG
[ENA]
¡û
>WENV180346928
OBLN01419617
[OBLN] sediment metagenome; sediment
183
109
-
Gln
TTG
[ENA]
¡û
>WENV181329415
OFLX01001192
[OFLX] seawater metagenome; seawater
802
876
+
Gln
TTG
[ENA]
¡û
>WENV182551562
OJCD01001931
[OJCD] seawater metagenome; Sea water
509
435
-
Gln
TTG
[ENA]
¡û
>WENV182563418
OJEC01000067
[OJEC] seawater metagenome; Sea water
3745
3819
+
Gln
TTG
[ENA]
¡û
>WENV182563586
OJEC01004816
[OJEC] seawater metagenome; Sea water
679
753
+
Gln
TTG
[ENA]
¡û
>WENV182564876
OJEF01011743
[OJEF] seawater metagenome; Sea water
928
854
-
Gln
TTG
[ENA]
¡û
>WENV182578146
OJGM01004544
[OJGM] seawater metagenome; Sea water
341
267
-
Gln
TTG
[ENA]
¡û
>WENV182578386
OJGN01003109
[OJGN] seawater metagenome; Sea water
228
154
-
Gln
TTG
[ENA]
¡û
>WENV182589722
OJIG01000096
[OJIG] seawater metagenome; Sea water
3764
3838
+
Gln
TTG
[ENA]
¡û
>WENV182590036
OJIH01000029
[OJIH] seawater metagenome; Sea water
10981
10907
-
Gln
TTG
[ENA]
¡û
>WENV182590038
OJIH01000029
[OJIH] seawater metagenome; Sea water
7197
7123
-
Gln
TTG
[ENA]
¡û
>WENV182592199
OJIQ01002256
[OJIQ] seawater metagenome; Sea water
952
1026
+
Gln
TTG
[ENA]
¡û
>WENV183055949
OLHH01009666
[OLHH] seawater metagenome; Sea water
944
1018
+
Gln
TTG
[ENA]
¡û
>WENV183058286
OLHP01001389
[OLHP] seawater metagenome; Sea water
329
403
+
Gln
TTG
[ENA]
¡û
>WENV183058359
OLHQ01001207
[OLHQ] seawater metagenome; Sea water
2191
2117
-
Gln
TTG
[ENA]
¡û
>WENV183618983
OOFP01011063
[OOFP] marine metagenome; seawater
616
690
+
Gln
TTG
[ENA]
¡û
>WENV183626889
OOGK01007142
[OOGK] marine metagenome; seawater
112
38
-
Gln
TTG
[ENA]
¡û
>WENV170014402
AYRF01024799
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
214
140
-
Gln
TTG
[ENA]
¡û
>WENV170325293
CEST01009126
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2224
2298
+
Gln
TTG
[ENA]
¡û
>WENV170603477
FUWD010311223
[FUWD] metagenome; unknown
91
17
-
Gln
TTG
[ENA]
¡û
>WENV170613327
FUWD012796613
[FUWD] metagenome; unknown
710
784
+
Gln
TTG
[ENA]
¡û
>WENV170704586
LLEL01002598
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
138
212
+
Gln
TTG
[ENA]
¡û
>WENV170704589
LLEL01003087
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
247
321
+
Gln
TTG
[ENA]
¡û
>WENV170782613
MAAC01010652
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
10057
9983
-
Gln
TTG
[ENA]
¡û
>WENV170782615
MAAC01010652
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9823
9749
-
Gln
TTG
[ENA]
¡û
>WENV170834223
MDSZ01093963
[MDSZ] marine metagenome; seawater
62145
62219
+
Gln
TTG
[ENA]
¡û
>W141712305
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
140526
140452
-
Gln
TTG
[ENA]
¡û
>W141775942
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
207312
207386
+
Gln
TTG
[ENA]
¡û
>W141775944
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
219627
219701
+
Gln
TTG
[ENA]
¡û
>W141775946
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
219862
219936
+
Gln
TTG
[ENA]
¡û
>W141775948
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
220195
220269
+
Gln
TTG
[ENA]
¡û
>W1810779452
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
156999
157073
+
Gln
TTG
[ENA]
¡û
>W1810779454
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
160812
160886
+
Gln
TTG
[ENA]
¡û
>W2010683138
JACEMT010000052
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
244551
244625
+
Gln
TTG
[ENA]
¡û
>W2011482886
RQXV01000004
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
179557
179483
-
Gln
TTG
[ENA]
¡û
>W2011482888
RQXV01000004
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
175445
175371
-
Gln
TTG
[ENA]
¡û
>W2011482890
RQXV01000004
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
175172
175098
-
Gln
TTG
[ENA]
¡û
>W2011482951
RQXW01000004
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
144832
144906
+
Gln
TTG
[ENA]
¡û
>W2011482953
RQXW01000004
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
148747
148821
+
Gln
TTG
[ENA]
¡û
>W2011482955
RQXW01000004
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
149019
149093
+
Gln
TTG
[ENA]
¡û
>W2110033972
BMOH01000006
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
179353
179279
-
Gln
TTG
[ENA]
¡û
>W2110033974
BMOH01000006
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
175241
175167
-
Gln
TTG
[ENA]
¡û
>W2110033976
BMOH01000006
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
174968
174894
-
Gln
TTG
[ENA]
¡û
>W2110639282
JAHQZT010000004
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
89330
89256
-
Gln
TTG
[ENA]
¡û
>C211000090
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3307617
3307691
+
Gln
TTG
-
¡û
>C211000092
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3311522
3311596
+
Gln
TTG
-
¡û
>C211000094
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3311797
3311871
+
Gln
TTG
-
¡û
>C231019764
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3348095
3348169
+
Gln
TTG
-
¡û
>C231019766
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3352000
3352074
+
Gln
TTG
-
¡û
>C231019768
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3352275
3352349
+
Gln
TTG
-
¡û
>C231467834
CP103300
Gammaproteobacteria
Endozoicomonas euniceicola EF212 [CP103300]
4530810
4530884
+
Gln
TTG
-
¡û
>C231467836
CP103300
Gammaproteobacteria
Endozoicomonas euniceicola EF212 [CP103300]
4545733
4545807
+
Gln
TTG
-
¡û
>C231467838
CP103300
Gammaproteobacteria
Endozoicomonas euniceicola EF212 [CP103300]
4546034
4546108
+
Gln
TTG
-
¡û
>W11170393
AFPL01000022
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
230454
230528
+
Gln
TTG
[ENA]
¡û
>C161054042
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4260099
4260025
-
Gln
TTG
[Ensembl]
¡û
>C161054044
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4247784
4247710
-
Gln
TTG
[Ensembl]
¡û
>C161054046
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4247549
4247475
-
Gln
TTG
[Ensembl]
¡û
>C161054048
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4247216
4247142
-
Gln
TTG
[Ensembl]
¡û
>W1610984068
LWEY01001744
Gammaproteobacteria
Oleiphilus sp. HI0043 [LWEY]
8489
8415
-
Gln
TTG
[ENA]
¡û
>W1610984231
LWFB01001698
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
901
827
-
Gln
TTG
[ENA]
¡û
>W1610984429
LWFE01000291
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
9107
9181
+
Gln
TTG
[ENA]
¡û
>W1610984738
LWFJ01001154
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
4958
4884
-
Gln
TTG
[ENA]
¡û
>W1610984834
LWFK01002084
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
23835
23909
+
Gln
TTG
[ENA]
¡û
>W1610984929
LWFM01000948
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
5965
5891
-
Gln
TTG
[ENA]
¡û
>W1610985269
LWFS01000036
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
4191
4117
-
Gln
TTG
[ENA]
¡û
>W1610985427
LWFV01000885
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
1624
1550
-
Gln
TTG
[ENA]
¡û
>W1610985589
LWFY01000091
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
467
541
+
Gln
TTG
[ENA]
¡û
>W1610985691
LWFZ01001413
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
15288
15362
+
Gln
TTG
[ENA]
¡û
>W1610985722
LWGA01000732
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
5057
5131
+
Gln
TTG
[ENA]
¡û
>W1610986016
LWGE01001173
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
3148
3222
+
Gln
TTG
[ENA]
¡û
>W1610986114
LWGG01000822
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
4997
5071
+
Gln
TTG
[ENA]
¡û
>W1610986295
LWGJ01001592
Gammaproteobacteria
Oleiphilus sp. HI0132 [LWGJ]
8593
8519
-
Gln
TTG
[ENA]
¡û
>W1710596391
FTMN01000006
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
272220
272294
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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