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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.386816 (117 seq.)
>W131227354
AUFC01000001
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
175152
175226
+
Thr
TGT
[ENA]
¡û
>WENV180222156
OBBC01015093
[OBBC] human gut metagenome; human gut
578
504
-
Thr
TGT
[ENA]
¡û
>WENV180240030
OBDB01127509
[OBDB] human gut metagenome; human gut
42
116
+
Thr
TGT
[ENA]
¡û
>WENV180337803
OBLG01135155
[OBLG] human gut metagenome; human gut
55
129
+
Thr
TGT
[ENA]
¡û
>WENV180537118
OCHN01125692
[OCHN] human gut metagenome; human gut
37
111
+
Thr
TGT
[ENA]
¡û
>WENV180539541
OCHP01042214
[OCHP] human gut metagenome; human gut
191
265
+
Thr
TGT
[ENA]
¡û
>WENV180543062
OCHT01053243
[OCHT] human gut metagenome; human gut
210
136
-
Thr
TGT
[ENA]
¡û
>WENV180549570
OCIY01172824
[OCIY] human gut metagenome; human gut
77
3
-
Thr
TGT
[ENA]
¡û
>WENV180566068
OCLH01050164
[OCLH] human gut metagenome; human gut
188
114
-
Thr
TGT
[ENA]
¡û
>WENV180567467
OCLL01055065
[OCLL] human gut metagenome; human gut
325
251
-
Thr
TGT
[ENA]
¡û
>WENV180629001
OCQP01015787
[OCQP] human gut metagenome; human gut
1351
1277
-
Thr
TGT
[ENA]
¡û
>WENV180631651
OCQY01036654
[OCQY] human gut metagenome; human gut
176
250
+
Thr
TGT
[ENA]
¡û
>WENV180649472
OCSK01057315
[OCSK] human gut metagenome; human gut
186
260
+
Thr
TGT
[ENA]
¡û
>WENV180719486
ODGJ01002114
[ODGJ] human metagenome; G_DNA_Tongue dorsum
601
527
-
Thr
TGT
[ENA]
¡û
>WENV180746939
ODHN01001067
[ODHN] human metagenome; G_DNA_Stool
2769
2843
+
Thr
TGT
[ENA]
¡û
>WENV180762358
ODHZ01110989
[ODHZ] human metagenome; G_DNA_Stool
30
104
+
Thr
TGT
[ENA]
¡û
>WENV180830341
ODKB01001990
[ODKB] human metagenome; G_DNA_Tongue dorsum
617
543
-
Thr
TGT
[ENA]
¡û
>WENV180858596
ODLC01013381
[ODLC] human metagenome; G_DNA_Tongue dorsum
1357
1431
+
Thr
TGT
[ENA]
¡û
>WENV180868291
ODLK01179226
[ODLK] human metagenome; G_DNA_Stool
56
130
+
Thr
TGT
[ENA]
¡û
>WENV180871164
ODLN01022142
[ODLN] human metagenome; G_DNA_Stool
889
963
+
Thr
TGT
[ENA]
¡û
>WENV180901597
ODOK01000803
[ODOK] human metagenome; G_DNA_Tongue dorsum
53
127
+
Thr
TGT
[ENA]
¡û
>WENV180958963
ODUM01000008
[ODUM] human metagenome; G_DNA_Tongue dorsum
28533
28607
+
Thr
TGT
[ENA]
¡û
>WENV180963451
ODUN01181004
[ODUN] human metagenome; G_DNA_Stool
60
134
+
Thr
TGT
[ENA]
¡û
>WENV180994396
ODVQ01080357
[ODVQ] human metagenome; G_DNA_Stool
385
311
-
Thr
TGT
[ENA]
¡û
>WENV181068461
ODZZ01000066
[ODZZ] human metagenome; G_DNA_Tongue dorsum
333
259
-
Thr
TGT
[ENA]
¡û
>WENV181073032
OEAN01115322
[OEAN] human metagenome; G_DNA_Stool
255
181
-
Thr
TGT
[ENA]
¡û
>WENV181111954
OEEL01000049
[OEEL] human metagenome; G_DNA_Tongue dorsum
23145
23219
+
Thr
TGT
[ENA]
¡û
>WENV181128401
OEFW01110058
[OEFW] human metagenome; G_DNA_Stool
239
313
+
Thr
TGT
[ENA]
¡û
>WENV181331604
OFLZ01011826
[OFLZ] human gut metagenome; human gut
1572
1646
+
Thr
TGT
[ENA]
¡û
>WENV181345851
OFML01001208
[OFML] human gut metagenome; human gut
14091
14165
+
Thr
TGT
[ENA]
¡û
>WENV181347827
OFMM01039934
[OFMM] human gut metagenome; human gut
19
93
+
Thr
TGT
[ENA]
¡û
>WENV181423803
OGCO01020132
[OGCO] human gut metagenome; human gut
515
441
-
Thr
TGT
[ENA]
¡û
>WENV181441948
OGDN01032897
[OGDN] human gut metagenome; human gut
895
969
+
Thr
TGT
[ENA]
¡û
>WENV181450938
OGDY01001866
[OGDY] metagenome; Human gut stool
70
144
+
Thr
TGT
[ENA]
¡û
>WENV181490876
OGFW01044524
[OGFW] metagenome; Human gut stool
80
6
-
Thr
TGT
[ENA]
¡û
>WENV181510201
OGGQ01044550
[OGGQ] metagenome; Human gut stool
228
302
+
Thr
TGT
[ENA]
¡û
>WENV181691995
OGOZ01047575
[OGOZ] human gut metagenome; faeces
370
296
-
Thr
TGT
[ENA]
¡û
>WENV181738409
OGQI01004678
[OGQI] human gut metagenome; faeces
5012
5086
+
Thr
TGT
[ENA]
¡û
>WENV181741618
OGQK01000878
[OGQK] human gut metagenome; faeces
5759
5833
+
Thr
TGT
[ENA]
¡û
>WENV181751380
OGQP01055642
[OGQP] human gut metagenome; faeces
142
216
+
Thr
TGT
[ENA]
¡û
>WENV181752206
OGQQ01002188
[OGQQ] human gut metagenome; faeces
134
208
+
Thr
TGT
[ENA]
¡û
>WENV181772086
OGRD01000158
[OGRD] human gut metagenome; faeces
43888
43962
+
Thr
TGT
[ENA]
¡û
>WENV181787084
OGRN01013022
[OGRN] human gut metagenome; faeces
1109
1035
-
Thr
TGT
[ENA]
¡û
>WENV181795565
OGRT01000367
[OGRT] human gut metagenome; faeces
27178
27252
+
Thr
TGT
[ENA]
¡û
>WENV181897144
OGXS01036480
[OGXS] human gut metagenome; faeces
721
647
-
Thr
TGT
[ENA]
¡û
>WENV181910569
OGYC01018950
[OGYC] human gut metagenome; faeces
1050
1124
+
Thr
TGT
[ENA]
¡û
>WENV181914426
OGYF01000242
[OGYF] human gut metagenome; faeces
4797
4723
-
Thr
TGT
[ENA]
¡û
>WENV182107426
OHIK01005680
[OHIK] human gut metagenome; feces
249
323
+
Thr
TGT
[ENA]
¡û
>WENV182135893
OHKJ01009794
[OHKJ] human gut metagenome; feces
52
126
+
Thr
TGT
[ENA]
¡û
>WENV182181016
OHNO01053316
[OHNO] human gut metagenome; feces
51
125
+
Thr
TGT
[ENA]
¡û
>WENV182383830
OIDT01049601
[OIDT] human gut metagenome; feces
152
226
+
Thr
TGT
[ENA]
¡û
>WENV182519730
OIWP01058973
[OIWP] human gut metagenome; faeces
445
519
+
Thr
TGT
[ENA]
¡û
>WENV182524614
OIWT01000401
[OIWT] human gut metagenome; faeces
75
149
+
Thr
TGT
[ENA]
¡û
>WENV182610451
OJJV01101387
[OJJV] metagenome; faeces
205
279
+
Thr
TGT
[ENA]
¡û
>WENV182622484
OJKJ01046502
[OJKJ] metagenome; faeces
474
400
-
Thr
TGT
[ENA]
¡û
>WENV182635731
OJKY01117519
[OJKY] metagenome; faeces
231
305
+
Thr
TGT
[ENA]
¡û
>WENV182639768
OJLA01122844
[OJLA] metagenome; faeces
216
290
+
Thr
TGT
[ENA]
¡û
>WENV182745785
OJQT01015108
[OJQT] human gut metagenome; stool sample
120
194
+
Thr
TGT
[ENA]
¡û
>WENV182747995
OJQW01000132
[OJQW] human gut metagenome; stool sample
10725
10799
+
Thr
TGT
[ENA]
¡û
>WENV182753356
OJRC01006373
[OJRC] human gut metagenome; stool sample
1301
1227
-
Thr
TGT
[ENA]
¡û
>WENV183032091
OLFX01058301
[OLFX] human gut metagenome; faeces
34
108
+
Thr
TGT
[ENA]
¡û
>WENV183094684
OLND01000082
[OLND] human gut metagenome; faeces
50103
50029
-
Thr
TGT
[ENA]
¡û
>WENV183112033
OLNP01000037
[OLNP] human gut metagenome; faeces
51048
51122
+
Thr
TGT
[ENA]
¡û
>WENV183124896
OLNW01070768
[OLNW] human gut metagenome; faeces
25
99
+
Thr
TGT
[ENA]
¡û
>WENV183191559
OLPR01015500
[OLPR] human gut metagenome; faeces
62
136
+
Thr
TGT
[ENA]
¡û
>WENV183215847
OLQG01024341
[OLQG] human gut metagenome; faeces
161
235
+
Thr
TGT
[ENA]
¡û
>WENV183221858
OLQL01039428
[OLQL] human gut metagenome; faeces
867
793
-
Thr
TGT
[ENA]
¡û
>WENV183229846
OLQT01000001
[OLQT] human gut metagenome; faeces
285390
285316
-
Thr
TGT
[ENA]
¡û
>WENV183232410
OLQU01009886
[OLQU] human gut metagenome; faeces
2080
2154
+
Thr
TGT
[ENA]
¡û
>WENV183234630
OLQV01080759
[OLQV] human gut metagenome; faeces
36
110
+
Thr
TGT
[ENA]
¡û
>WENV183237027
OLQX01071844
[OLQX] human gut metagenome; faeces
356
282
-
Thr
TGT
[ENA]
¡û
>WENV183243802
OLRD01001089
[OLRD] human gut metagenome; faeces
9239
9165
-
Thr
TGT
[ENA]
¡û
>WENV183247461
OLRF01003935
[OLRF] human gut metagenome; faeces
580
506
-
Thr
TGT
[ENA]
¡û
>WENV183266641
OLRT01006308
[OLRT] human gut metagenome; faeces
1023
949
-
Thr
TGT
[ENA]
¡û
>WENV183268526
OLRU01007782
[OLRU] human gut metagenome; faeces
60
134
+
Thr
TGT
[ENA]
¡û
>WENV183272973
OLRX01001213
[OLRX] human gut metagenome; faeces
522
448
-
Thr
TGT
[ENA]
¡û
>WENV183279620
OLSB01000627
[OLSB] human gut metagenome; faeces
15293
15367
+
Thr
TGT
[ENA]
¡û
>WENV183284607
OLSD01033594
[OLSD] human gut metagenome; faeces
388
314
-
Thr
TGT
[ENA]
¡û
>WENV183299978
OLSN01072354
[OLSN] human gut metagenome; faeces
539
465
-
Thr
TGT
[ENA]
¡û
>WENV183345827
OLWR01032176
[OLWR] human gut metagenome; feces
161
235
+
Thr
TGT
[ENA]
¡û
>WENV183372365
OLXW01008705
[OLXW] human gut metagenome; feces
846
772
-
Thr
TGT
[ENA]
¡û
>WENV183393920
OLZF01025868
[OLZF] human gut metagenome; feces
187
261
+
Thr
TGT
[ENA]
¡û
>WENV183502096
OMGS01040479
[OMGS] human gut metagenome; human gut
680
606
-
Thr
TGT
[ENA]
¡û
>WENV183521994
OMNU01079756
[OMNU] human gut metagenome; feces
220
294
+
Thr
TGT
[ENA]
¡û
>WENV183569635
OOCB01102961
[OOCB] human gut metagenome; human gut
373
447
+
Thr
TGT
[ENA]
¡û
>WENV183640908
OQVL01013857
[OQVL] human gut metagenome; human gut
3321
3395
+
Thr
TGT
[ENA]
¡û
>WENV183649173
OQVS01128028
[OQVS] human gut metagenome; human gut
464
390
-
Thr
TGT
[ENA]
¡û
>WENV183654491
OQWA01051558
[OQWA] human gut metagenome; human gut
170
244
+
Thr
TGT
[ENA]
¡û
>WENV183655160
OQWD01007271
[OQWD] human gut metagenome; human gut
2102
2176
+
Thr
TGT
[ENA]
¡û
>WENV183656179
OQWE01008333
[OQWE] human gut metagenome; human gut
481
407
-
Thr
TGT
[ENA]
¡û
>WENV183659586
OQWM01036390
[OQWM] human gut metagenome; human gut
601
527
-
Thr
TGT
[ENA]
¡û
>WENV183704387
PDWI01000200
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
28266
28340
+
Thr
TGT
[ENA]
¡û
>WENV183774041
PPYF01029202
[PPYF] human gut metagenome; stool from patient with Crohn's disease
94
168
+
Thr
TGT
[ENA]
¡û
>WENV170070330
CDZQ01021918
[CDZQ] gut metagenome; human stools
113666
113592
-
Thr
TGT
[ENA]
¡û
>WENV170561572
CZCA01014260
[CZCA] anaerobic digester metagenome; anaerobic digester
820
894
+
Thr
TGT
[ENA]
¡û
>WENV170562703
CZCB01004783
[CZCB] anaerobic digester metagenome; anaerobic digester
6656
6730
+
Thr
TGT
[ENA]
¡û
>WENV170687544
LFRM01198556
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
811
885
+
Thr
TGT
[ENA]
¡û
>WENV170777429
LXOW01282414
[LXOW] bovine gut metagenome; Cow rumen
465
539
+
Thr
TGT
[ENA]
¡û
>WENV170968906
MTKW01016677
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
957
883
-
Thr
TGT
[ENA]
¡û
>C191138175
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1760700
1760626
-
Thr
TGT
-
¡û
>C191138189
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1758797
1758723
-
Thr
TGT
-
¡û
>W2010342380
CADAVL010000133
Bacillota
Ruminococcaceae bacterium [CADAVL]
35
109
+
Thr
TGT
[ENA]
¡û
>W2011317355
QWEQ01000004
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
20103
20029
-
Thr
TGT
[ENA]
¡û
>W2011317469
QWES01000005
Bacillota
Anaerotruncus sp. 80 [QWES]
8281
8207
-
Thr
TGT
[ENA]
¡û
>W2011336863
QXWK01000005
Bacillota
Anaerotruncus colihominis 28 [QXWK]
8281
8207
-
Thr
TGT
[ENA]
¡û
>W2011338165
QXXF01000006
Bacillota
Clostridiales bacterium 16 [QXXF]
160911
160837
-
Thr
TGT
[ENA]
¡û
>W2110122179
CAJSZK010000012
Bacillota
Clostridia bacterium [CAJSZK]
78069
78143
+
Thr
TGT
[ENA]
¡û
>W2110122802
CAJTAE010000013
Bacillota
Clostridia bacterium [CAJTAE]
4859
4785
-
Thr
TGT
[ENA]
¡û
>W2110129443
CAJTHX010000006
Bacillota
Clostridia bacterium [CAJTHX]
106907
106833
-
Thr
TGT
[ENA]
¡û
>W2110249912
JACRWC010000029
Bacillota
Clostridiales Family XIII bacterium BX16 [JACRWC]
11510
11584
+
Thr
TGT
[ENA]
¡û
>W2110507204
JAFJZZ010000001
Bacillota
Clostridium aminobutyricum DSM 2634 [JAFJZZ]
315101
315175
+
Thr
TGT
[ENA]
¡û
>C211058004
CP042469
Bacillota
Clostridiales bacterium MT110 [CP042469]
809072
809146
+
Thr
TGT
-
¡û
>C241130152
CP048649
Bacillota
Aminipila butyrica DSM 103574 [CP048649]
2485139
2485065
-
Thr
TGT
-
¡û
>C241130166
CP048649
Bacillota
Aminipila butyrica DSM 103574 [CP048649]
2483595
2483521
-
Thr
TGT
-
¡û
>W1511577797
LARA01000033
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
705
779
+
Thr
TGT
[ENA]
¡û
>W1511578086
LARA01000114
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
625
699
+
Thr
TGT
[ENA]
¡û
>W1610947623
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
102594
102668
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK