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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.387005 (75 seq.)
>W1711272737
LZFO01000010
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
76064
75990
-
Glu
TTC
[ENA]
¡û
>W1711272741
LZFO01000010
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
75704
75630
-
Glu
TTC
[ENA]
¡û
>WENV180346673
OBLN01212969
[OBLN] sediment metagenome; sediment
221
295
+
Glu
TTC
[ENA]
¡û
>WENV180651044
OCSZ01057447
[OCSZ] human gut metagenome; human gut
206
280
+
Glu
TTC
[ENA]
¡û
>WENV180747877
ODHN01024216
[ODHN] human metagenome; G_DNA_Stool
28
102
+
Glu
TTC
[ENA]
¡û
>WENV180962058
ODUN01004972
[ODUN] human metagenome; G_DNA_Stool
2003
1929
-
Glu
TTC
[ENA]
¡û
>WENV180971958
ODUU01153402
[ODUU] human metagenome; G_DNA_Stool
285
211
-
Glu
TTC
[ENA]
¡û
>WENV181274950
OFGI01023402
[OFGI] mouse gut metagenome; faeces
449
523
+
Glu
TTC
[ENA]
¡û
>WENV181285595
OFGS01003883
[OFGS] hot springs metagenome; Water and soil
524
598
+
Glu
TTC
[ENA]
¡û
>WENV181411511
OGCI01028980
[OGCI] hot springs metagenome; Hot spring water
251
177
-
Glu
TTC
[ENA]
¡û
>W141149986
AXAA01000015
Bacillota
Caloramator sp. ALD01 [AXAA]
39303
39229
-
Glu
TTC
[ENA]
¡û
>W141150007
AXAA01000054
Bacillota
Caloramator sp. ALD01 [AXAA]
114
188
+
Glu
TTC
[ENA]
¡û
>WENV182957586
OKWG01023965
[OKWG] human gut metagenome; human gut
337
411
+
Glu
TTC
[ENA]
¡û
>WENV170015659
AZII01001626
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
17
91
+
Glu
TTC
[ENA]
¡û
>WENV170688294
LFRM01238303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
729
655
-
Glu
TTC
[ENA]
¡û
>WENV170688297
LFRM01238303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
451
377
-
Glu
TTC
[ENA]
¡û
>WENV170716720
LSQX01009426
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
119
45
-
Glu
TTC
[ENA]
¡û
>C191106410
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2749019
2748945
-
Glu
TTC
-
¡û
>C191106414
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2748672
2748598
-
Glu
TTC
-
¡û
>W141557376
JHVC01000012
Bacillota
Clostridium lundense DSM 17049 [JHVC]
123606
123532
-
Glu
TTC
[ENA]
¡û
>W141557379
JHVC01000012
Bacillota
Clostridium lundense DSM 17049 [JHVC]
123324
123250
-
Glu
TTC
[ENA]
¡û
>W141557392
JHVC01000020
Bacillota
Clostridium lundense DSM 17049 [JHVC]
66966
67040
+
Glu
TTC
[ENA]
¡û
>W141732454
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
326090
326016
-
Glu
TTC
[ENA]
¡û
>W141732457
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
325820
325746
-
Glu
TTC
[ENA]
¡û
>W1911594906
PNFY01000008
Bacillota
Dolosicoccus paucivorans UMB0860 [PNFY]
20587
20516
-
Glu
TTC
[ENA]
¡û
>W1911594907
PNFY01000008
Bacillota
Dolosicoccus paucivorans UMB0860 [PNFY]
20481
20408
-
Glu
TTC
[ENA]
¡û
>W1911594919
PNFY01000053
Bacillota
Dolosicoccus paucivorans UMB0860 [PNFY]
317
390
+
Glu
TTC
[ENA]
¡û
>W1911596453
PNHE01000023
Bacillota
Dolosicoccus paucivorans UMB0852 [PNHE]
22950
22879
-
Glu
TTC
[ENA]
¡û
>W1911596454
PNHE01000023
Bacillota
Dolosicoccus paucivorans UMB0852 [PNHE]
22844
22771
-
Glu
TTC
[ENA]
¡û
>W1911596464
PNHE01000057
Bacillota
Dolosicoccus paucivorans UMB0852 [PNHE]
321
394
+
Glu
TTC
[ENA]
¡û
>C151086656
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4574420
4574346
-
Glu
TTC
[Ensembl]
¡û
>C151086660
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4574085
4574011
-
Glu
TTC
[Ensembl]
¡û
>W2010272356
CABKUB020000005
Bacillota
Clostridium niameyense [CABKUB]
85604
85530
-
Glu
TTC
[ENA]
¡û
>W2010272360
CABKUB020000005
Bacillota
Clostridium niameyense [CABKUB]
85254
85180
-
Glu
TTC
[ENA]
¡û
>W2010272363
CABKUB020000005
Bacillota
Clostridium niameyense [CABKUB]
84929
84855
-
Glu
TTC
[ENA]
¡û
>W2011203953
PNFY01000008
Bacillota
Dolosicoccus paucivorans UMB0860 [PNFY]
20587
20516
-
Glu
TTC
[ENA]
¡û
>W2011203954
PNFY01000008
Bacillota
Dolosicoccus paucivorans UMB0860 [PNFY]
20481
20408
-
Glu
TTC
[ENA]
¡û
>W2011203966
PNFY01000053
Bacillota
Dolosicoccus paucivorans UMB0860 [PNFY]
317
390
+
Glu
TTC
[ENA]
¡û
>W2011205349
PNHE01000023
Bacillota
Dolosicoccus paucivorans UMB0852 [PNHE]
22950
22879
-
Glu
TTC
[ENA]
¡û
>W2011205350
PNHE01000023
Bacillota
Dolosicoccus paucivorans UMB0852 [PNHE]
22844
22771
-
Glu
TTC
[ENA]
¡û
>W2011205360
PNHE01000057
Bacillota
Dolosicoccus paucivorans UMB0852 [PNHE]
321
394
+
Glu
TTC
[ENA]
¡û
>W2011654251
SOAZ01000025
Bacillota
Fonticella tunisiensis DSM 24455 [SOAZ]
12143
12217
+
Glu
TTC
[ENA]
¡û
>W2011654272
SOAZ01000043
Bacillota
Fonticella tunisiensis DSM 24455 [SOAZ]
107
181
+
Glu
TTC
[ENA]
¡û
>W2011654276
SOAZ01000056
Bacillota
Fonticella tunisiensis DSM 24455 [SOAZ]
340
414
+
Glu
TTC
[ENA]
¡û
>W2011740983
SXDP01000014
Bacillota
Clostridium niameyense IFR 18/094 [SXDP]
42867
42941
+
Glu
TTC
[ENA]
¡û
>W2011741015
SXDP01000036
Bacillota
Clostridium niameyense IFR 18/094 [SXDP]
227
301
+
Glu
TTC
[ENA]
¡û
>W2011741016
SXDP01000037
Bacillota
Clostridium niameyense IFR 18/094 [SXDP]
138
212
+
Glu
TTC
[ENA]
¡û
>W2011957460
UYZZ01000007
Bacillota
Clostridium sp. Marseille-P4200 [UYZZ]
124486
124412
-
Glu
TTC
[ENA]
¡û
>W2011957462
UYZZ01000007
Bacillota
Clostridium sp. Marseille-P4200 [UYZZ]
124214
124140
-
Glu
TTC
[ENA]
¡û
>W2011957466
UYZZ01000007
Bacillota
Clostridium sp. Marseille-P4200 [UYZZ]
123870
123796
-
Glu
TTC
[ENA]
¡û
>W2110101519
CAJFNL010000006
Bacillota
Candidatus Gallimonas intestinalis [CAJFNL]
108902
108976
+
Glu
TTC
[ENA]
¡û
>W2110518540
JAFNJU010000008
Bacillota
Proteiniclasticum sp. SCR006 [JAFNJU]
151804
151730
-
Glu
TTC
[ENA]
¡û
>W2110518543
JAFNJU010000008
Bacillota
Proteiniclasticum sp. SCR006 [JAFNJU]
151538
151464
-
Glu
TTC
[ENA]
¡û
>W2110539901
JAGGLM010000023
Bacillota
Clostridium algifaecis DSM 28783 [JAGGLM]
253
327
+
Glu
TTC
[ENA]
¡û
>W2110539910
JAGGLM010000028
Bacillota
Clostridium algifaecis DSM 28783 [JAGGLM]
31703
31777
+
Glu
TTC
[ENA]
¡û
>W2110622444
JAHLQF010000005
Bacillota
Clostridium sp. MSJ-11 [JAHLQF]
114498
114424
-
Glu
TTC
[ENA]
¡û
>W2110622448
JAHLQF010000005
Bacillota
Clostridium sp. MSJ-11 [JAHLQF]
114145
114071
-
Glu
TTC
[ENA]
¡û
>W2110622451
JAHLQF010000005
Bacillota
Clostridium sp. MSJ-11 [JAHLQF]
113876
113802
-
Glu
TTC
[ENA]
¡û
>C231599575
CP117677
Bacillota
Caloramator sp. mosi_1 [CP117677]
1183056
1183130
+
Glu
TTC
-
¡û
>C231599606
CP117677
Bacillota
Caloramator sp. mosi_1 [CP117677]
1113146
1113072
-
Glu
TTC
-
¡û
>C231599616
CP117677
Bacillota
Caloramator sp. mosi_1 [CP117677]
1103312
1103238
-
Glu
TTC
-
¡û
>C231611050
CP118396
Bacillota
Caloramator sp. Dgby_cultured_2 [CP118396]
2597990
2598064
+
Glu
TTC
-
¡û
>C241297461
CP131467
Bacillota
Clostridium sp. JS66 [CP131467]
6279652
6279578
-
Glu
TTC
-
¡û
>W1510647768
CVPI01000005
Bacillota
Clostridium niameyense mt5 [CVPI]
85604
85530
-
Glu
TTC
[ENA]
¡û
>W1510647772
CVPI01000005
Bacillota
Clostridium niameyense mt5 [CVPI]
85254
85180
-
Glu
TTC
[ENA]
¡û
>W1510647775
CVPI01000005
Bacillota
Clostridium niameyense mt5 [CVPI]
84929
84855
-
Glu
TTC
[ENA]
¡û
>W11115421
ADEK01000026
Bacillota
Clostridium carboxidivorans P7 [ADEK]
45649
45723
+
Glu
TTC
[ENA]
¡û
>W121124034
BAEV01000139
Bacillota
Clostridium arbusti SL206 [BAEV]
760
686
-
Glu
TTC
[ENA]
¡û
>W121124041
BAEV01000156
Bacillota
Clostridium arbusti SL206 [BAEV]
30
104
+
Glu
TTC
[ENA]
¡û
>W1710518395
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
35710
35784
+
Glu
TTC
[ENA]
¡û
>W1710518398
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
35980
36054
+
Glu
TTC
[ENA]
¡û
>W1710519041
FNEL01000080
Bacillota
Dolosicoccus paucivorans [FNEL]
4414
4341
-
Glu
TTC
[ENA]
¡û
>W1710519064
FNEL01000105
Bacillota
Dolosicoccus paucivorans [FNEL]
1012
1083
+
Glu
TTC
[ENA]
¡û
>W1710570846
FOVK01000017
Bacillota
Proteiniclasticum ruminis [FOVK]
336
262
-
Glu
TTC
[ENA]
¡û
>W1710584013
FQVG01000006
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
23303
23377
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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