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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.387094 (119 seq.)
>W1710861004
LMDI01000012
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
380644
380718
+
Thr
GGT
[ENA]
¡û
>W1710865284
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
3737128
3737202
+
Thr
GGT
[ENA]
¡û
>W1710866505
LMHN01000009
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
288
214
-
Thr
GGT
[ENA]
¡û
>W1710891316
LNCS01000012
Betaproteobacteria
Achromobacter xylosoxidans [LNCS]
723255
723329
+
Thr
GGT
[ENA]
¡û
>W1710893452
LNET01000108
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
325
251
-
Thr
GGT
[ENA]
¡û
>W1711077958
LSMI01000033
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
42603
42529
-
Thr
GGT
[ENA]
¡û
>W1711095597
LTGY01000138
Betaproteobacteria
Achromobacter xylosoxidans HMSC070F04 [LTGY]
60378
60452
+
Thr
GGT
[ENA]
¡û
>W1711114988
LTZT01000206
Betaproteobacteria
Achromobacter xylosoxidans HMSC15D03 [LTZT]
41411
41485
+
Thr
GGT
[ENA]
¡û
>W1711148559
LVKO01000097
Betaproteobacteria
Achromobacter ruhlandii [LVKO]
65096
65022
-
Thr
GGT
[ENA]
¡û
>W1711187817
LWPU01000782
Betaproteobacteria
Achromobacter xylosoxidans HMSC18C08 [LWPU]
39985
40059
+
Thr
GGT
[ENA]
¡û
>W1711219912
LXPW01000036
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
121416
121490
+
Thr
GGT
[ENA]
¡û
>W1711254642
LYQM01001366
Betaproteobacteria
Achromobacter xylosoxidans [LYQM]
352
278
-
Thr
GGT
[ENA]
¡û
>W1711386272
MEFD01000011
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
7230
7304
+
Thr
GGT
[ENA]
¡û
>W1711466664
MJMO01000003
Betaproteobacteria
Achromobacter xylosoxidans [MJMO]
564
490
-
Thr
GGT
[ENA]
¡û
>W1711504524
MKUQ01000026
Betaproteobacteria
Burkholderiales bacterium 70-64 [MKUQ]
194
120
-
Thr
GGT
[ENA]
¡û
>W1711658909
MQNQ01000983
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
1899
1973
+
Thr
GGT
[ENA]
¡û
>W1711723202
MTLI01000123
Betaproteobacteria
Achromobacter xylosoxidans [MTLI]
80902
80976
+
Thr
GGT
[ENA]
¡û
>W1712110519
NJIH01000003
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
211152
211078
-
Thr
GGT
[ENA]
¡û
>C171035725
CP015118
Betaproteobacteria
Piscinibacter gummiphilus NS21 [CP015118]
587048
587122
+
Thr
GGT
-
¡û
>W131214637
ATUI01000035
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
16823
16897
+
Thr
GGT
[ENA]
¡û
>C013929
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
3668689
3668615
-
Thr
GGT
[Ensembl]
¡û
>WENV180024135
FTIF01063497
[FTIF] metagenome; soil
1409
1483
+
Thr
GGT
[ENA]
¢þ
>WENV180034056
FTKM01304814
[FTKM] metagenome; soil
199
125
-
Thr
GGT
[ENA]
¢þ
>WENV180225947
OBBP01006022
[OBBP] human oral metagenome; human oral
133
59
-
Thr
GGT
[ENA]
¢þ
>WENV180550341
OCJA01000568
[OCJA] human oral metagenome; human oral
1343
1269
-
Thr
GGT
[ENA]
¢þ
>WENV180731550
ODGW01002028
[ODGW] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV180733261
ODGY01087949
[ODGY] human metagenome; G_DNA_Supragingival plaque
166
240
+
Thr
GGT
[ENA]
¢þ
>WENV180741206
ODHG01102667
[ODHG] human metagenome; G_DNA_Buccal mucosa
64
138
+
Thr
GGT
[ENA]
¢þ
>WENV180749873
ODHS01000059
[ODHS] human metagenome; G_DNA_Supragingival plaque
78389
78463
+
Thr
GGT
[ENA]
¢þ
>WENV180776136
ODIK01018331
[ODIK] human metagenome; G_DNA_Tongue dorsum
697
771
+
Thr
GGT
[ENA]
¢þ
>WENV180777395
ODIL01003900
[ODIL] human metagenome; G_DNA_Supragingival plaque
1949
2023
+
Thr
GGT
[ENA]
¢þ
>WENV180786841
ODIS01000334
[ODIS] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV180803822
ODJG01000086
[ODJG] human metagenome; G_DNA_Supragingival plaque
74457
74531
+
Thr
GGT
[ENA]
¢þ
>WENV180806372
ODJH01014506
[ODJH] human metagenome; G_DNA_Tongue dorsum
232
158
-
Thr
GGT
[ENA]
¢þ
>WENV180810040
ODJK01096583
[ODJK] human metagenome; G_DNA_Subgingival plaque
377
451
+
Thr
GGT
[ENA]
¢þ
>WENV180814586
ODJO01025527
[ODJO] human metagenome; G_DNA_Supragingival plaque
1376
1302
-
Thr
GGT
[ENA]
¢þ
>WENV180824299
ODJX01002706
[ODJX] human metagenome; G_DNA_Supragingival plaque
3676
3602
-
Thr
GGT
[ENA]
¢þ
>WENV180833678
ODKD01000057
[ODKD] human metagenome; G_DNA_Supragingival plaque
11180
11254
+
Thr
GGT
[ENA]
¢þ
>WENV180847267
ODKT01057554
[ODKT] human metagenome; G_DNA_Supragingival plaque
735
809
+
Thr
GGT
[ENA]
¢þ
>WENV180859091
ODLD01000011
[ODLD] human metagenome; G_DNA_Supragingival plaque
149976
149902
-
Thr
GGT
[ENA]
¢þ
>WENV180891833
ODMQ01018489
[ODMQ] human metagenome; G_DNA_Supragingival plaque
487
561
+
Thr
GGT
[ENA]
¢þ
>WENV180901310
ODOJ01126342
[ODOJ] human metagenome; G_DNA_Tongue dorsum
129
203
+
Thr
GGT
[ENA]
¢þ
>WENV180934309
ODTR01101251
[ODTR] human metagenome; G_DNA_Supragingival plaque
3
77
+
Thr
GGT
[ENA]
¢þ
>WENV180935212
ODTS01114323
[ODTS] human metagenome; G_DNA_Subgingival plaque
235
161
-
Thr
GGT
[ENA]
¢þ
>WENV180943606
ODUC01001167
[ODUC] human metagenome; G_DNA_Supragingival plaque
14255
14329
+
Thr
GGT
[ENA]
¢þ
>WENV180957931
ODUL01000013
[ODUL] human metagenome; G_DNA_Supragingival plaque
79335
79409
+
Thr
GGT
[ENA]
¢þ
>WENV180968737
ODUT01067227
[ODUT] human metagenome; G_DNA_Tongue dorsum
78
152
+
Thr
GGT
[ENA]
¢þ
>WENV180982810
ODVF01000814
[ODVF] human metagenome; G_DNA_Supragingival plaque
16744
16818
+
Thr
GGT
[ENA]
¢þ
>WENV181003373
ODVX01010587
[ODVX] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV181018783
ODWU01000075
[ODWU] human metagenome; G_DNA_Supragingival plaque
66693
66767
+
Thr
GGT
[ENA]
¢þ
>WENV181064053
ODYP01008479
[ODYP] human metagenome; G_DNA_Supragingival plaque
784
858
+
Thr
GGT
[ENA]
¢þ
>WENV181083359
OEAV01005788
[OEAV] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV181123576
OEFQ01000039
[OEFQ] human metagenome; G_DNA_Supragingival plaque
20037
19963
-
Thr
GGT
[ENA]
¢þ
>WENV181137601
OEGJ01008453
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2439
2513
+
Thr
GGT
[ENA]
¢þ
>WENV181143831
OEHM01013015
[OEHM] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV181153504
OEIA01102640
[OEIA] human metagenome; G_DNA_Supragingival plaque
267
341
+
Thr
GGT
[ENA]
¢þ
>WENV181182239
OEJV01004208
[OEJV] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV181227262
OFDN01004425
[OFDN] hot springs metagenome; Water
6261
6335
+
Thr
GGT
[ENA]
¢þ
>W141214270
AZSN01000356
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
1062
1136
+
Thr
GGT
[ENA]
¡û
>W141223632
BADL01000074
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
5210
5284
+
Thr
GGT
[ENA]
¡û
>C08005945
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
4348073
4348002
-
Thr
GGT
[Ensembl]
¡û
>WENV183736438
PJUC01003405
[PJUC] soil metagenome; Soil enriched on filter paper
214
140
-
Thr
GGT
[ENA]
¢þ
>WENV183738819
PJUE01000255
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
331
257
-
Thr
GGT
[ENA]
¢þ
>WENV183742170
PJUH01000903
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
253
179
-
Thr
GGT
[ENA]
¢þ
>WENV183742551
PJUI01000012
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
253
179
-
Thr
GGT
[ENA]
¢þ
>WENV183743987
PJUK01000100
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
67166
67240
+
Thr
GGT
[ENA]
¢þ
>WENV183747999
PPFU01006442
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1256
1182
-
Thr
GGT
[ENA]
¢þ
>WENV170767914
LXNH01007867
[LXNH] seawater metagenome; marine seawater
348
274
-
Thr
GGT
[ENA]
¢þ
>WENV170784696
MCNG01000009
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
31221
31147
-
Thr
GGT
[ENA]
¢þ
>WENV170965270
MTEU01000129
[MTEU] soil metagenome; naturally attenuated soil
17095
17021
-
Thr
GGT
[ENA]
¢þ
>W09101379
AAEM01000002
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
27238
27312
+
Thr
GGT
[ENA]
¡û
>C181103469
CP024645
Betaproteobacteria
Piscinibacter gummiphilus NBRC 109400 [CP024645]
587049
587123
+
Thr
GGT
-
¡û
>C181210750
LS483395
Betaproteobacteria
Achromobacter xylosoxidans NCTC10808 [LS483395]
6683048
6682974
-
Thr
GGT
-
¡û
>C141011132
CP006958
Betaproteobacteria
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [CP006958]
6631211
6631137
-
Thr
GGT
[Ensembl]
¡û
>W1911748800
QWFB01000026
Betaproteobacteria
Achromobacter sp. K91 [QWFB]
122659
122585
-
Thr
GGT
[ENA]
¡û
>W1810222114
POQS01000007
Betaproteobacteria
Achromobacter pulmonis ANB-1 [POQS]
53247
53321
+
Thr
GGT
[ENA]
¡û
>W1810448824
PZMK01001444
Betaproteobacteria
Achromobacter xylosoxidans BHW-15 [PZMK]
349
275
-
Thr
GGT
[ENA]
¡û
>W1810580289
QETA01000008
Betaproteobacteria
Corticimicrobacter populi 3d-2-2 [QETA]
157342
157416
+
Thr
GGT
[ENA]
¡û
>C151051247
CP009448
Betaproteobacteria
Achromobacter xylosoxidans [CP009448]
6078678
6078604
-
Thr
GGT
[Ensembl]
¡û
>W11103756
ACRC01000701
Betaproteobacteria
Achromobacter xylosoxidans C54 [ACRC]
52566
52640
+
Thr
GGT
[ENA]
¡û
>W1511318703
JPYO01000013
Betaproteobacteria
Achromobacter sp. RTa [JPYO]
225942
225868
-
Thr
GGT
[ENA]
¡û
>W1511448472
JUZW01000241
Betaproteobacteria
Achromobacter xylosoxidans 618_AXYL [JUZW]
39989
40063
+
Thr
GGT
[ENA]
¡û
>W1511448505
JUZX01000177
Betaproteobacteria
Achromobacter xylosoxidans 617_AXYL [JUZX]
265
191
-
Thr
GGT
[ENA]
¡û
>W1511552111
JZUE01000009
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
252636
252710
+
Thr
GGT
[ENA]
¡û
>W11144243
AEQP01000022
Betaproteobacteria
Lautropia mirabilis ATCC 51599 [AEQP]
465
391
-
Thr
GGT
[ENA]
¡û
>W1511642010
LDVI01000289
Betaproteobacteria
Achromobacter xylosoxidans A7 [LDVI]
226
152
-
Thr
GGT
[ENA]
¡û
>W1511642218
LDVO01000191
Betaproteobacteria
Achromobacter xylosoxidans A13 [LDVO]
6615
6689
+
Thr
GGT
[ENA]
¡û
>W1511680903
LFHA01000004
Betaproteobacteria
Achromobacter xylosoxidans CF304 [LFHA]
523
449
-
Thr
GGT
[ENA]
¡û
>C121001084
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
330701
330775
+
Thr
GGT
[Ensembl]
¡û
>C161061970
CP013923
Betaproteobacteria
Achromobacter denitrificans USDA-ARS-USMARC-56712 [CP013923]
11668
11594
-
Thr
GGT
-
¡û
>W121036328
AHLZ01000001
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
378649
378723
+
Thr
GGT
[ENA]
¡û
>W121111233
ALJE01000059
Betaproteobacteria
Achromobacter marplatensis HLE [ALJE]
22529
22603
+
Thr
GGT
[ENA]
¡û
>W1610070237
BCTC01000015
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
92704
92778
+
Thr
GGT
[ENA]
¡û
>W1610070926
BCTQ01000006
Betaproteobacteria
Achromobacter denitrificans NBRC 15125 [BCTQ]
25605
25679
+
Thr
GGT
[ENA]
¡û
>W1610094012
CYTK01000005
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
593413
593487
+
Thr
GGT
[ENA]
¡û
>W1610094154
CYTN01000004
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608622 [CYTN]
112357
112431
+
Thr
GGT
[ENA]
¡û
>W1610094337
CYTR01000005
Betaproteobacteria
Achromobacter sp. 2789STDY5608633 [CYTR]
277322
277248
-
Thr
GGT
[ENA]
¡û
>W1610094504
CYTU01000023
Betaproteobacteria
Achromobacter sp. 2789STDY5608621 [CYTU]
96546
96620
+
Thr
GGT
[ENA]
¡û
>W1610094747
CYTZ01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663429 [CYTZ]
1334
1260
-
Thr
GGT
[ENA]
¡û
>W1610094785
CYUA01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663447 [CYUA]
424671
424745
+
Thr
GGT
[ENA]
¡û
>W1610723350
LMDI01000012
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
380644
380718
+
Thr
GGT
[ENA]
¡û
>W1610727630
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
3737128
3737202
+
Thr
GGT
[ENA]
¡û
>W1610728851
LMHN01000009
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
288
214
-
Thr
GGT
[ENA]
¡û
>W1610751712
LNCS01000012
Betaproteobacteria
Achromobacter xylosoxidans [LNCS]
723255
723329
+
Thr
GGT
[ENA]
¡û
>W1610753718
LNET01000108
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
325
251
-
Thr
GGT
[ENA]
¡û
>W1611004384
LXPW01000036
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
121416
121490
+
Thr
GGT
[ENA]
¡û
>W1710043655
BBCZ01000662
Betaproteobacteria
Achromobacter xylosoxidans JCM 9787 [BBCZ]
432
358
-
Thr
GGT
[ENA]
¡û
>W1710067610
BCTC01000015
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
92704
92778
+
Thr
GGT
[ENA]
¡û
>W1710068248
BCTQ01000006
Betaproteobacteria
Achromobacter denitrificans NBRC 15125 [BCTQ]
25605
25679
+
Thr
GGT
[ENA]
¡û
>W1710096470
CYSV01000026
Betaproteobacteria
Achromobacter ruhlandii 2789STDY5608617 [CYSV]
81386
81460
+
Thr
GGT
[ENA]
¡û
>W1710096869
CYTG01000024
Betaproteobacteria
Achromobacter ruhlandii 2789STDY5608608 [CYTG]
81270
81344
+
Thr
GGT
[ENA]
¡û
>W1710097055
CYTK01000005
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
593413
593487
+
Thr
GGT
[ENA]
¡û
>W1710097105
CYTL01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608630 [CYTL]
366077
366151
+
Thr
GGT
[ENA]
¡û
>W1710097197
CYTN01000004
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608622 [CYTN]
112357
112431
+
Thr
GGT
[ENA]
¡û
>W1710097338
CYTR01000005
Betaproteobacteria
Achromobacter sp. 2789STDY5608633 [CYTR]
277322
277248
-
Thr
GGT
[ENA]
¡û
>W1710097505
CYTU01000023
Betaproteobacteria
Achromobacter sp. 2789STDY5608621 [CYTU]
96546
96620
+
Thr
GGT
[ENA]
¡û
>W1710097707
CYTZ01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663429 [CYTZ]
1334
1260
-
Thr
GGT
[ENA]
¡û
>W1710097745
CYUA01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663447 [CYUA]
424671
424745
+
Thr
GGT
[ENA]
¡û
>W1710541628
FNYM01000002
Betaproteobacteria
Achromobacter sp. NFACC18-2 [FNYM]
524782
524856
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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