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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.387311 (54 seq.)
>W1710880596
LMSL01000006
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
61774
61848
+
Val
TAC
[ENA]
¡û
>W1711387260
MEGL01000061
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
2914
2840
-
Val
TAC
[ENA]
¡û
>WENV180017632
FSXK01001892
[FSXK] metagenome; soil
4418
4344
-
Val
TAC
[ENA]
¡û
>WENV180019160
FTBI01000799
[FTBI] metagenome; soil
4502
4428
-
Val
TAC
[ENA]
¡û
>WENV180028674
FTJE01742182
[FTJE] metagenome; soil
299
225
-
Val
TAC
[ENA]
¡û
>WENV181123073
OEFO01076472
[OEFO] soil metagenome; soil
102
176
+
Val
TAC
[ENA]
¡û
>WENV181155158
OEID01010495
[OEID] soil metagenome; soil
97
171
+
Val
TAC
[ENA]
¡û
>WENV181163516
OEIQ01066204
[OEIQ] soil metagenome; soil
91
165
+
Val
TAC
[ENA]
¡û
>WENV181164342
OEIR01120787
[OEIR] soil metagenome; soil
88
162
+
Val
TAC
[ENA]
¡û
>WENV183697511
OUNK010000066
[OUNK] metagenome; soil
29936
30010
+
Val
TAC
[ENA]
¡û
>WENV170558362
CXWL01065789
[CXWL] groundwater metagenome; biofilm material
1107
1181
+
Val
TAC
[ENA]
¡û
>W1910896584
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
2028354
2028428
+
Val
TAC
[ENA]
¡û
>W1911199796
NRDP01000012
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
51219
51293
+
Val
TAC
[ENA]
¡û
>W1810485585
QAVX01000011
Gammaproteobacteria
Dyella sp. C11 [QAVX]
102858
102784
-
Val
TAC
[ENA]
¡û
>W1810597201
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
377846
377920
+
Val
TAC
[ENA]
¡û
>W1810628328
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
156361
156287
-
Val
TAC
[ENA]
¡û
>W1810629406
QIRF01000001
Gammaproteobacteria
Dyella sp. C9 [QIRF]
506438
506512
+
Val
TAC
[ENA]
¡û
>W1810783276
QQSY01000007
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
72240
72314
+
Val
TAC
[ENA]
¡û
>W1810785108
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
72772
72698
-
Val
TAC
[ENA]
¡û
>W1810785136
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
897311
897237
-
Val
TAC
[ENA]
¡û
>W2010910277
MSZV01000048
Gammaproteobacteria
Fulvimonas soli LMG 19981 [MSZV]
53477
53403
-
Val
TAC
[ENA]
¡û
>W2010957078
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
2028354
2028428
+
Val
TAC
[ENA]
¡û
>W2011048012
NRDP01000012
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
51219
51293
+
Val
TAC
[ENA]
¡û
>W2011404629
RCWW01000001
Gammaproteobacteria
Dyella sp. YR388 [RCWW]
1216072
1216146
+
Val
TAC
[ENA]
¡û
>W2011509561
RYYV01000001
Gammaproteobacteria
Dyella sp. 4M-K27 [RYYV]
79253
79179
-
Val
TAC
[ENA]
¡û
>W2011509774
RYZR01000003
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
530382
530308
-
Val
TAC
[ENA]
¡û
>W2011529193
SAYT01000002
Gammaproteobacteria
Dyella sp. DHC06 [SAYT]
347775
347701
-
Val
TAC
[ENA]
¡û
>W2011603255
SIZZ01000001
Gammaproteobacteria
Dyella terrae KACC 12748 [SIZZ]
1255629
1255555
-
Val
TAC
[ENA]
¡û
>W2011613330
SJTG01000001
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
1147345
1147419
+
Val
TAC
[ENA]
¡û
>W2011613384
SJTG01000002
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
1153308
1153234
-
Val
TAC
[ENA]
¡û
>W2110011759
BCPR01000017
Gammaproteobacteria
Dyella sp. EPa41 [BCPR]
65413
65487
+
Val
TAC
[ENA]
¡û
>W2110027277
BMJA01000001
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
181491
181417
-
Val
TAC
[ENA]
¡û
>W2110295373
JACZZA010000007
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
99105
99031
-
Val
TAC
[ENA]
¡û
>W2110325936
JADIKC010000003
Gammaproteobacteria
Dyella kyungheensis THG-B117 [JADIKC]
927574
927648
+
Val
TAC
[ENA]
¡û
>W2110325985
JADIKE010000035
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
135573
135499
-
Val
TAC
[ENA]
¡û
>W2110425283
JAELTQ010000012
Gammaproteobacteria
Dyella sp. ASV24 [JAELTQ]
59897
59971
+
Val
TAC
[ENA]
¡û
>W2110425487
JAELTT010000043
Gammaproteobacteria
Dyella sp. ASV21 [JAELTT]
31754
31828
+
Val
TAC
[ENA]
¡û
>W2110557792
JAGJRS010000034
Gammaproteobacteria
Frateuria sp. MAH-13 [JAGJRS]
241356
241430
+
Val
TAC
[ENA]
¡û
>C211133266
CP060412
Gammaproteobacteria
Dyella sp. G9 [CP060412]
4986345
4986271
-
Val
TAC
-
¡û
>C231252177
CP088252
Gammaproteobacteria
Frateuria sp. 5GH9-11 [CP088252]
1356038
1356112
+
Val
TAC
-
¡û
>C231262021
CP089414
Gammaproteobacteria
Dyella terrae Ely Copper Mine [CP089414]
1064147
1064073
-
Val
TAC
-
¡û
>C241305431
CP132911
Gammaproteobacteria
Dyella sp. A6 [CP132911]
2064690
2064616
-
Val
TAC
-
¡û
>W2310024360
BSNP01000007
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
2278483
2278557
+
Val
TAC
[ENA]
¡û
>W2310024382
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
358242
358316
+
Val
TAC
[ENA]
¡û
>W2310024428
BSNR01000001
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
180231
180305
+
Val
TAC
[ENA]
¡û
>W2310024633
BSOA01000003
Gammaproteobacteria
Dyella flagellata NBRC 111981 [BSOA]
365041
365115
+
Val
TAC
[ENA]
¡û
>W2310024707
BSOB01000061
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
210129
210203
+
Val
TAC
[ENA]
¡û
>W1511686275
LFQR01000030
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
92015
92089
+
Val
TAC
[ENA]
¡û
>C161078230
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
854811
854885
+
Val
TAC
[Ensembl]
¡û
>W121113886
ALOY01000159
Gammaproteobacteria
Dyella japonica A8 [ALOY]
46717
46791
+
Val
TAC
[ENA]
¡û
>W1610742942
LMSL01000006
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
61774
61848
+
Val
TAC
[ENA]
¡û
>W1710541153
FNYC01000003
Gammaproteobacteria
Frateuria terrea [FNYC]
150645
150719
+
Val
TAC
[ENA]
¡û
>W1710573391
FOXL01000004
Gammaproteobacteria
Frateuria terrea [FOXL]
400775
400701
-
Val
TAC
[ENA]
¡û
>W1710575681
FOZI01000005
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
380481
380555
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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