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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.387676 (36 seq.)
>W1710901188
LNKT01000007
Campylobacterota
Sulfurovum riftiae [LNKT]
25491
25417
-
Gln
TTG
[ENA]
¡û
>WENV180242104
OBDI01084852
[OBDI] metagenome; diffuse fluid
167
93
-
Gln
TTG
[ENA]
¡û
>WENV180287446
OBIK01057795
[OBIK] hydrothermal vent metagenome; sea water
248
174
-
Gln
TTG
[ENA]
¡û
>WENV180287482
OBIK01078960
[OBIK] hydrothermal vent metagenome; sea water
87
161
+
Gln
TTG
[ENA]
¡û
>WENV180288248
OBIL01097819
[OBIL] metagenome; hydrothermal vent
151
77
-
Gln
TTG
[ENA]
¡û
>WENV180316834
OBKJ01000091
[OBKJ] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV180345856
OBLN01007792
[OBLN] sediment metagenome; sediment
2583
2657
+
Gln
TTG
[ENA]
¡û
>WENV181206177
OFAT01000093
[OFAT] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV181206563
OFAW01000134
[OFAW] metagenome; hydrothermal vent
466
392
-
Gln
TTG
[ENA]
¡û
>WENV181206852
OFAW01015049
[OFAW] metagenome; hydrothermal vent
31
105
+
Gln
TTG
[ENA]
¡û
>WENV181207051
OFAY01000124
[OFAY] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV181207421
OFAZ01000125
[OFAZ] metagenome; hydrothermal vent
466
392
-
Gln
TTG
[ENA]
¡û
>WENV181207788
OFBA01000144
[OFBA] metagenome; hydrothermal vent
466
392
-
Gln
TTG
[ENA]
¡û
>WENV181208169
OFBB01000153
[OFBB] metagenome; hydrothermal vent
466
392
-
Gln
TTG
[ENA]
¡û
>WENV181208591
OFBC01000130
[OFBC] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV181214620
OFBY01003480
[OFBY] metagenome; hydrothermal vent
1668
1594
-
Gln
TTG
[ENA]
¡û
>WENV181223758
OFDD01000136
[OFDD] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV181224153
OFDE01000097
[OFDE] metagenome; hydrothermal vent
466
392
-
Gln
TTG
[ENA]
¡û
>WENV181224379
OFDF01000089
[OFDF] metagenome; hydrothermal vent
466
392
-
Gln
TTG
[ENA]
¡û
>WENV181224614
OFDG01000124
[OFDG] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV181225333
OFDI01000147
[OFDI] metagenome; hydrothermal vent
10470
10544
+
Gln
TTG
[ENA]
¡û
>WENV181228244
OFDO01005082
[OFDO] metagenome; hydrothermal vent
110
36
-
Gln
TTG
[ENA]
¡û
>WENV181412737
OGCK01005963
[OGCK] hot springs metagenome; hot spring sediment
2470
2396
-
Gln
TTG
[ENA]
¡û
>WENV183514760
OMKS01030718
[OMKS] sediment metagenome; hot spring sediment
2185
2259
+
Gln
TTG
[ENA]
¡û
>WENV170005844
AMQJ01003072
[AMQJ] sediment metagenome; subsurface aquifer sediment
164475
164401
-
Gln
TTG
[ENA]
¡û
>WENV170575721
FPHK01000056
[FPHK] hydrothermal vent metagenome genome assembly, contig: NODE_31.; water
6934
7008
+
Gln
TTG
[ENA]
¡û
>WENV170657449
JTFO01155283
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
259
185
-
Gln
TTG
[ENA]
¡û
>W2011544807
SDID01000014
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
214
140
-
Gln
TTG
[ENA]
¡û
>C211052437
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
1337128
1337202
+
Gln
TTG
-
¡û
>C211052438
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
1337246
1337317
+
Gln
TTG
-
¡û
>C211052655
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
1148290
1148364
+
Gln
TTG
-
¡û
>C211172826
CP063164
Campylobacterota
Sulfurovum indicum ST-419 [CP063164]
1039078
1039004
-
Gln
TTG
-
¡û
>C241081506
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
1271909
1271983
+
Gln
TTG
-
¡û
>W1511327846
JQIQ01000015
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
390
316
-
Gln
TTG
[ENA]
¡û
>W1511327927
JQIS01000058
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
63454
63380
-
Gln
TTG
[ENA]
¡û
>W1610760559
LNKT01000007
Campylobacterota
Sulfurovum riftiae [LNKT]
25491
25417
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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