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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.388132 (8 seq.)
>WENV181360726
OFMZ01000388
[OFMZ] sediment metagenome; Lake sediment
1631
1705
+
Ala
TGC
[ENA]
¡û
>WENV181360939
OFNE01000068
[OFNE] sediment metagenome; Lake sediment
1859
1785
-
Ala
TGC
[ENA]
¡û
>WENV181361096
OFNG01000658
[OFNG] sediment metagenome; Lake sediment
1192
1118
-
Ala
TGC
[ENA]
¡û
>WENV181361226
OFNM01000120
[OFNM] sediment metagenome; Lake sediment
1688
1762
+
Ala
TGC
[ENA]
¡û
>WENV181361549
OFOB01000120
[OFOB] sediment metagenome; Lake sediment
1603
1529
-
Ala
TGC
[ENA]
¡û
>WENV181362901
OFOL01000199
[OFOL] sediment metagenome; Lake sediment
661
735
+
Ala
TGC
[ENA]
¡û
>WENV181362979
OFOM01000418
[OFOM] sediment metagenome; Lake sediment
917
843
-
Ala
TGC
[ENA]
¡û
>WENV181364373
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
6576
6502
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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