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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389572 (14 seq.)
>WENV180800133
ODJC01087966
[ODJC] human metagenome; G_DNA_Stool
348
276
-
Glu
CTC
[ENA]
¡û
>WENV180971163
ODUU01016440
[ODUU] human metagenome; G_DNA_Stool
2010
2082
+
Glu
CTC
[ENA]
¡û
>WENV181355545
OFMT01003389
[OFMT] human gut metagenome; human gut
3472
3544
+
Glu
CTC
[ENA]
¡û
>WENV181711484
OGPP01000131
[OGPP] human gut metagenome; faeces
2801
2729
-
Glu
CTC
[ENA]
¡û
>WENV182000472
OHAY01000026
[OHAY] human gut metagenome; faeces
126097
126169
+
Glu
CTC
[ENA]
¡û
>WENV182163968
OHMK01009602
[OHMK] human gut metagenome; feces
837
765
-
Glu
CTC
[ENA]
¡û
>WENV182352673
OIBK01004104
[OIBK] human gut metagenome; feces
1285
1212
-
Glu
CTC
[ENA]
¡û
>WENV182648839
OJMG01000901
[OJMG] human gut metagenome; feces
1139
1067
-
Glu
CTC
[ENA]
¡û
>WENV182712974
OJPF01019502
[OJPF] human gut metagenome; stool sample
790
718
-
Glu
CTC
[ENA]
¡û
>WENV183412898
OMAM01036545
[OMAM] human gut metagenome; feces
104
31
-
Glu
CTC
[ENA]
¡û
>WENV183494887
OMGK01025366
[OMGK] human gut metagenome; human gut
75
3
-
Glu
CTC
[ENA]
¡û
>WENV183495716
OMGL01008772
[OMGL] human gut metagenome; human gut
2748
2820
+
Glu
CTC
[ENA]
¡û
>WENV183592878
OOCZ01004835
[OOCZ] human gut metagenome; human gut
4757
4685
-
Glu
CTC
[ENA]
¡û
>W141559609
JHWW01000004
Bacillota
Lachnospiraceae bacterium V9D3004 [JHWW]
134276
134349
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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