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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389979 (71 seq.)
>W1710882910
LMVF01000006
Betaproteobacteria
Cupriavidus necator [LMVF]
43882
43808
-
Arg
CCT
[ENA]
¡û
>W131104546
APCR01000365
Betaproteobacteria
Comamonas sp. B-9 [APCR]
15809
15883
+
Arg
CCT
[ENA]
¡û
>W1711168280
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
484113
484187
+
Arg
CCT
[ENA]
¡û
>W1711384836
MEDL01000022
Betaproteobacteria
Acidovorax sp. SCN 68-22 [MEDL]
24588
24514
-
Arg
CCT
[ENA]
¡û
>W1711384854
MEDL01000154
Betaproteobacteria
Acidovorax sp. SCN 68-22 [MEDL]
75
1
-
Arg
CCT
[ENA]
¡û
>W1711386814
MEFU01000038
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
31575
31649
+
Arg
CCT
[ENA]
¡û
>C171033728
CP014839
Betaproteobacteria
Pandoraea thiooxydans ATSB16 [CP014839]
1016574
1016648
+
Arg
CCT
-
¡û
>C171067025
CP017751
Betaproteobacteria
Cupriavidus sp. USMAHM13 [CP017751, CP017752]
3443679
3443605
-
Arg
CCT
-
¡û
>C171067104
CP017754
Betaproteobacteria
Cupriavidus malaysiensis USMAA1020 [CP017754, CP017755]
3567306
3567232
-
Arg
CCT
-
¡û
>W131052526
AMZA01000263
Betaproteobacteria
beta proteobacterium FWI2 [AMZA]
1793
1719
-
Arg
CCT
[ENA]
¡û
>W131063341
ANKP01000229
Betaproteobacteria
Cupriavidus sp. HMR-1 [ANKP]
85396
85470
+
Arg
CCT
[ENA]
¡û
>W131156645
AQPZ01000048
Betaproteobacteria
Cupriavidus sp. GA3-3 GA3-3 [AQPZ]
55729
55655
-
Arg
CCT
[ENA]
¡û
>W131164917
ARBE01000324
Betaproteobacteria
Cupriavidus sp. UYPR2.512 [ARBE]
33017
32943
-
Arg
CCT
[ENA]
¡û
>C018762
CP000352
Betaproteobacteria
Cupriavidus metallidurans CH34 [CP000352]
2786122
2786048
-
Arg
CCT
[Ensembl]
¡û
>WENV180039555
LLBY010090810
[LLBY] soil metagenome; soil from tomato rhizosphere
5421
5347
-
Arg
CCT
[ENA]
¢þ
>WENV180100393
OAON01000482
[OAON] sediment metagenome; sediment
862
788
-
Arg
CCT
[ENA]
¢þ
>WENV180311615
OBJT01411244
[OBJT] soil metagenome; soil
136
210
+
Arg
CCT
[ENA]
¢þ
>WENV180355209
OBNH01000019
[OBNH] sediment metagenome; sediment
90812
90738
-
Arg
CCT
[ENA]
¢þ
>WENV180356149
OBNK01000420
[OBNK] sediment metagenome; sediment
850
776
-
Arg
CCT
[ENA]
¢þ
>WENV181221614
OFCW01000075
[OFCW] microbial mat metagenome; Microbial Mat
18606
18680
+
Arg
CCT
[ENA]
¢þ
>W141152442
AXBU01000045
Betaproteobacteria
Cupriavidus metallidurans H1130 [AXBU]
159103
159029
-
Arg
CCT
[ENA]
¡û
>W141278153
JAFD01000014
Betaproteobacteria
Burkholderia sp. UYPR1.413 [JAFD]
126103
126177
+
Arg
CCT
[ENA]
¡û
>WENV183739231
PJUE01003964
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
942
868
-
Arg
CCT
[ENA]
¢þ
>WENV170961745
MLJW01000840
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4893
4967
+
Arg
CCT
[ENA]
¢þ
>WENV170965594
MTEU01004414
[MTEU] soil metagenome; naturally attenuated soil
10412
10338
-
Arg
CCT
[ENA]
¢þ
>W141485118
JFZD01000008
Betaproteobacteria
Cupriavidus metallidurans [JFZD]
4876
4802
-
Arg
CCT
[ENA]
¡û
>W141485159
JFZE01000035
Betaproteobacteria
Cupriavidus metallidurans [JFZE]
173638
173712
+
Arg
CCT
[ENA]
¡û
>W141485253
JFZF01000079
Betaproteobacteria
Cupriavidus metallidurans [JFZF]
297885
297959
+
Arg
CCT
[ENA]
¡û
>C191001073
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
1584006
1583932
-
Arg
CCT
-
¡û
>C191154535
CP037900
Betaproteobacteria
Cupriavidus metallidurans BS1 [CP037900, CP037901]
2892573
2892499
-
Arg
CCT
-
¡û
>W09100010
AAAI03000001
Betaproteobacteria
Cupriavidus metallidurans CH34 [AAAI]
121513
121439
-
Arg
CCT
[ENA]
¡û
>W141818205
JQLI01000008
Betaproteobacteria
Cupriavidus necator A5-1 [JQLI]
3605073
3604999
-
Arg
CCT
[ENA]
¡û
>W1910207469
FLMQ01000056
Betaproteobacteria
Thiomonas delicata DSM 16361 [FLMQ]
315627
315553
-
Arg
CCT
[ENA]
¡û
>W1910501935
FYAX01000013
Betaproteobacteria
Cupriavidus metallidurans NDB4MOL1 [FYAX]
577438
577512
+
Arg
CCT
[ENA]
¡û
>W1910700084
MESE01000062
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
56622
56548
-
Arg
CCT
[ENA]
¡û
>W1911518152
OFSN01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFSN]
37899
37825
-
Arg
CCT
[ENA]
¡û
>W1911518243
OFSP01000013
Betaproteobacteria
Cupriavidus taiwanensis [OFSP]
153101
153027
-
Arg
CCT
[ENA]
¡û
>W1911518383
OFSS01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFSS]
776766
776692
-
Arg
CCT
[ENA]
¡û
>W1911518526
OFSU01000014
Betaproteobacteria
Cupriavidus taiwanensis [OFSU]
37921
37847
-
Arg
CCT
[ENA]
¡û
>W1911518561
OFSV01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFSV]
735839
735765
-
Arg
CCT
[ENA]
¡û
>W1911518640
OFSX01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFSX]
740699
740625
-
Arg
CCT
[ENA]
¡û
>W1911518718
OFSZ01000002
Betaproteobacteria
Cupriavidus taiwanensis [OFSZ]
213858
213784
-
Arg
CCT
[ENA]
¡û
>W1911518847
OFTB01000014
Betaproteobacteria
Cupriavidus taiwanensis [OFTB]
3090
3016
-
Arg
CCT
[ENA]
¡û
>W1911519011
OFTE01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFTE]
38829
38755
-
Arg
CCT
[ENA]
¡û
>W1911519079
OFTF01000015
Betaproteobacteria
Cupriavidus taiwanensis [OFTF]
108963
108889
-
Arg
CCT
[ENA]
¡û
>W1911519133
OFTG01000019
Betaproteobacteria
Cupriavidus taiwanensis [OFTG]
38094
38020
-
Arg
CCT
[ENA]
¡û
>W1911519395
OFTL01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTL]
38317
38243
-
Arg
CCT
[ENA]
¡û
>W1911519585
OFTO01000014
Betaproteobacteria
Cupriavidus taiwanensis [OFTO]
5898
5824
-
Arg
CCT
[ENA]
¡û
>W1911519629
OFTP01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFTP]
49724
49650
-
Arg
CCT
[ENA]
¡û
>W1911802786
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
2536693
2536767
+
Arg
CCT
[ENA]
¡û
>W1810017334
BGPQ01000013
Betaproteobacteria
Cupriavidus sp. P-10 [BGPQ]
195550
195624
+
Arg
CCT
[ENA]
¡û
>W1810177567
PJRP01000028
Betaproteobacteria
Cupriavidus pauculus UM1 [PJRP]
33705
33631
-
Arg
CCT
[ENA]
¡û
>W1810200755
PNXZ01000022
Betaproteobacteria
Trinickia caryophylli Ballard 720 [PNXZ]
23652
23726
+
Arg
CCT
[ENA]
¡û
>W1810537697
QDFJ01000020
Betaproteobacteria
Cupriavidus metallidurans BS1 [QDFJ]
139065
139139
+
Arg
CCT
[ENA]
¡û
>W1810573215
QEKP01000001
Betaproteobacteria
Cupriavidus alkaliphilus CAG-122 [QEKP]
38669
38595
-
Arg
CCT
[ENA]
¡û
>W1810658991
QJJS01000007
Betaproteobacteria
Sphaerotilus hippei DSM 566 [QJJS]
201576
201502
-
Arg
CCT
[ENA]
¡û
>W1810861227
QTTS01000003
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
14254
14180
-
Arg
CCT
[ENA]
¡û
>C151084529
CP011568
Betaproteobacteria
Pandoraea thiooxydans DSM 25325 [CP011568]
621033
621107
+
Arg
CCT
-
¡û
>W1510015024
BBQM01000011
Betaproteobacteria
Cupriavidus basilensis KF708 [BBQM]
207064
207138
+
Arg
CCT
[ENA]
¡û
>W1510742418
CYIG01000007
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
150576
150502
-
Arg
CCT
[ENA]
¡û
>W121113646
ALOU01000006
Betaproteobacteria
Cupriavidus sp. BIS7 [ALOU]
19736
19810
+
Arg
CCT
[ENA]
¡û
>W1610054052
BBSL01000090
Betaproteobacteria
Burkholderia sp. E7m39 [BBSL]
5711
5637
-
Arg
CCT
[ENA]
¡û
>W1610074332
BCWO01000037
Betaproteobacteria
Cupriavidus oxalaticus NBRC 13593 [BCWO]
69974
70048
+
Arg
CCT
[ENA]
¡û
>W1610744836
LMVF01000006
Betaproteobacteria
Cupriavidus necator [LMVF]
43882
43808
-
Arg
CCT
[ENA]
¡û
>W1610978195
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
484113
484187
+
Arg
CCT
[ENA]
¡û
>W1630013798
LNEU01000023
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
103721
103795
+
Arg
CCT
[ENA]
¡û
>W1730016312
LNEU01000023
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
103721
103795
+
Arg
CCT
[ENA]
¡û
>W1710050751
BBSL01000090
Betaproteobacteria
Burkholderia sp. E7m39 [BBSL]
5711
5637
-
Arg
CCT
[ENA]
¡û
>W1710071450
BCWO01000037
Betaproteobacteria
Cupriavidus oxalaticus NBRC 13593 [BCWO]
69974
70048
+
Arg
CCT
[ENA]
¡û
>W1710525445
FNJO01000001
Betaproteobacteria
Ralstonia sp. 25mfcol4.1 [FNJO]
488425
488351
-
Arg
CCT
[ENA]
¡û
>W1710551538
FOGD01000008
Betaproteobacteria
Giesbergeria anulus [FOGD]
19261
19187
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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