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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391103 (93 seq.)
>W1711302070
MAIS01000037
Bacillota
Paenibacillus sp. KS1 [MAIS]
43885
43811
-
Arg
CCG
[ENA]
¡û
>W1711677122
MRTH01000007
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
300860
300934
+
Arg
CCG
[ENA]
¡û
>W1711979172
NDGJ01000035
Bacillota
Paenibacillus apiarius [NDGJ]
88942
88868
-
Arg
CCG
[ENA]
¡û
>W1711979202
NDGK01000004
Bacillota
Paenibacillus thiaminolyticus [NDGK]
15099
15173
+
Arg
CCG
[ENA]
¡û
>W131174384
ARIL01000014
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
28909
28835
-
Arg
CCG
[ENA]
¡û
>W131227953
AUFO01000014
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
35179
35253
+
Arg
CCG
[ENA]
¡û
>W131234978
AULE01000029
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
49806
49732
-
Arg
CCG
[ENA]
¡û
>W131235718
AULU01000012
Bacillota
Paenibacillus assamensis DSM 18201 [AULU]
49949
49875
-
Arg
CCG
[ENA]
¡û
>W141073487
ASSE01000257
Bacillota
Paenibacillus massiliensis T7 [ASSE]
22945
23019
+
Arg
CCG
[ENA]
¡û
>W141080202
ATMS01000012
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
114286
114360
+
Arg
CCG
[ENA]
¡û
>W141080281
ATMT01000010
Bacillota
Paenibacillus alvei TS-15 [ATMT]
22269
22343
+
Arg
CCG
[ENA]
¡û
>WENV181801342
OGSB01000096
[OGSB] human gut metagenome; fecal sample 5 from infant 3
45025
44951
-
Arg
CCG
[ENA]
¡û
>WENV181822843
OGUH01000089
[OGUH] human gut metagenome; fecal sample 3 from infant 3
44892
44818
-
Arg
CCG
[ENA]
¡û
>WENV170705883
LNAP01000568
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10873
10947
+
Arg
CCG
[ENA]
¡û
>WENV170708416
LNAP01079655
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
794
722
-
Arg
CCG
[ENA]
¡û
>W141462561
JFHX01000007
Bacillota
Paenibacillus ehimensis A2 [JFHX]
198033
198107
+
Arg
CCG
[ENA]
¡û
>W141702841
JMLT01000006
Bacillota
Paenibacillus sp. UNC217MF [JMLT]
45112
45038
-
Arg
CCG
[ENA]
¡û
>W141754359
JNVM01000046
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
35555
35629
+
Arg
CCG
[ENA]
¡û
>W1910007058
BBYF01000009
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
185738
185812
+
Arg
CCG
[ENA]
¡û
>W1910154826
BIMB01000061
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
12099
12173
+
Arg
CCG
[ENA]
¡û
>W1910155146
BIMI01000014
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
15029
15103
+
Arg
CCG
[ENA]
¡û
>W1910175775
BJCS01000022
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
30566
30493
-
Arg
CCG
[ENA]
¡û
>W1910505734
FYEP01000035
Bacillota
Paenibacillus elgii B69 [FYEP]
36477
36551
+
Arg
CCG
[ENA]
¡û
>W1910505935
FYER01000015
Bacillota
Paenibacillus sp. St-s [FYER]
56981
56907
-
Arg
CCG
[ENA]
¡û
>W1910831980
MYFO01000017
Bacillota
Paenibacillus sp. MEC069 [MYFO]
38279
38206
-
Arg
CCG
[ENA]
¡û
>W1910913933
NHRJ02000018
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
27655
27581
-
Arg
CCG
[ENA]
¡û
>W1911809768
QYZD01000001
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
44715
44641
-
Arg
CCG
[ENA]
¡û
>W1810402761
PYHP01000010
Bacillota
Paenibacillus elgii AC13 [PYHP]
13477
13551
+
Arg
CCG
[ENA]
¡û
>W1810674237
QJVJ01000013
Bacillota
Paenibacillus flagellatus DXL2 [QJVJ]
44338
44264
-
Arg
CCG
[ENA]
¡û
>W1810683191
QKVW01000006
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
525
451
-
Arg
CCG
[ENA]
¡û
>W2010075416
BBYF01000009
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
185738
185812
+
Arg
CCG
[ENA]
¡û
>W2010087573
BILX01000056
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
31137
31063
-
Arg
CCG
[ENA]
¡û
>W2010087761
BIMB01000061
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
12099
12173
+
Arg
CCG
[ENA]
¡û
>W2010088081
BIMI01000014
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
15029
15103
+
Arg
CCG
[ENA]
¡û
>W2010089152
BJCS01000022
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
30566
30493
-
Arg
CCG
[ENA]
¡û
>W2010288269
CABMNB010000004
Bacillota
Paenibacillus thiaminolyticus [CABMNB]
15099
15173
+
Arg
CCG
[ENA]
¡û
>W2010425624
FYER01000015
Bacillota
Paenibacillus sp. St-s [FYER]
56981
56907
-
Arg
CCG
[ENA]
¡û
>W2010471245
JAAGWC010000048
Bacillota
Paenibacillus elgii LMG 24465 [JAAGWC]
52212
52286
+
Arg
CCG
[ENA]
¡û
>W2010473766
JAAIKC010000019
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
36743
36816
+
Arg
CCG
[ENA]
¡û
>W2010488606
JAAIVH010000001
Bacillota
Paenibacillus elgii SWL-W8 [JAAIVH]
173458
173532
+
Arg
CCG
[ENA]
¡û
>W2010499558
JAALJM010000006
Bacillota
Paenibacillus thiaminolyticus Mbale [JAALJM]
791095
791021
-
Arg
CCG
[ENA]
¡û
>W2010578098
JAAWWZ010000142
Bacillota
Paenibacillus dendritiformis CRN 18 [JAAWWZ]
14925
14999
+
Arg
CCG
[ENA]
¡û
>W2010599660
JABFOR010000023
Bacillota
Paenibacillus alvei JR949 [JABFOR]
40794
40720
-
Arg
CCG
[ENA]
¡û
>W2010637755
JABVCT010000060
Bacillota
Paenibacillus alvei bk032014 [JABVCT]
17257
17331
+
Arg
CCG
[ENA]
¡û
>W2010922100
MYFO01000017
Bacillota
Paenibacillus sp. MEC069 [MYFO]
38279
38206
-
Arg
CCG
[ENA]
¡û
>W2010966954
NHRJ02000018
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
27655
27581
-
Arg
CCG
[ENA]
¡û
>W2011345212
QYZD01000001
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
44715
44641
-
Arg
CCG
[ENA]
¡û
>W2011367615
RBAH01000023
Bacillota
Paenibacillus ginsengarvi KCTC 13059 [RBAH]
117021
117093
+
Arg
CCG
[ENA]
¡û
>W2011524082
SADY01000006
Bacillota
Paenibacillus sp. SDF0028 [SADY]
44177
44103
-
Arg
CCG
[ENA]
¡û
>W2011577130
SGWF01000020
Bacillota
Paenibacillus sp. JMULE4 [SGWF]
281777
281850
+
Arg
CCG
[ENA]
¡û
>W2011639535
SMRT01000006
Bacillota
Paenibacillus sp. MS74 [SMRT]
27304
27230
-
Arg
CCG
[ENA]
¡û
>W2011642812
SMZW01000004
Bacillota
Paenibacillus dendritiformis F-A1 [SMZW]
67567
67493
-
Arg
CCG
[ENA]
¡û
>W2011648902
SNXD01000008
Bacillota
Paenibacillus sp. BK673 [SNXD]
28896
28822
-
Arg
CCG
[ENA]
¡û
>W2011833734
UGRZ01000002
Bacillota
Paenibacillus thiaminolyticus NCTC11027 [UGRZ]
1662285
1662359
+
Arg
CCG
[ENA]
¡û
>W2011979026
VCRA01000004
Bacillota
Paenibacillus sp. SYSU_K30004 [VCRA]
493497
493571
+
Arg
CCG
[ENA]
¡û
>W2011980460
VDCQ01000077
Bacillota
Paenibacillus hemerocallicola KCTC 33185 [VDCQ]
33644
33570
-
Arg
CCG
[ENA]
¡û
>W2012098321
VNJK01000003
Bacillota
Paenibacillus sp. N4 [VNJK]
38643
38569
-
Arg
CCG
[ENA]
¡û
>W2012125913
VRTT01000021
Bacillota
Paenibacillus sp. N3.4 [VRTT]
66930
67006
+
Arg
CCG
[ENA]
¡û
>W2012328602
WHOD01000129
Bacillota
Paenibacillus sp. LMG 31456 [WHOD]
14039
14113
+
Arg
CCG
[ENA]
¡û
>W2012429611
WSQB01000038
Bacillota
Paenibacillus alvei MP1 [WSQB]
41730
41656
-
Arg
CCG
[ENA]
¡û
>W2110067022
BORX01000002
Bacillota
Paenibacillus dendritiformis J27TS7 [BORX]
107954
107880
-
Arg
CCG
[ENA]
¡û
>W2110067116
BORY01000047
Bacillota
Paenibacillus dendritiformis J6TS7 [BORY]
39614
39688
+
Arg
CCG
[ENA]
¡û
>W2110284087
JACXJA010000031
Bacillota
Paenibacillus sp. IB182363 [JACXJA]
83806
83880
+
Arg
CCG
[ENA]
¡û
>W2110289713
JACYTN010000021
Bacillota
Paenibacillus sp. CAU 1523 [JACYTN]
50700
50774
+
Arg
CCG
[ENA]
¡û
>W2110338746
JADMOL010000005
Bacillota
Paenibacillus sp. 1001270B_150601_E10 [JADMOL]
299370
299444
+
Arg
CCG
[ENA]
¡û
>W2110499399
JAFIBN010000001
Bacillota
Paenibacillus sp. PvP091 [JAFIBN]
4541162
4541236
+
Arg
CCG
[ENA]
¡û
>W2110499849
JAFIBU010000001
Bacillota
Paenibacillus sp. PvR098 [JAFIBU]
3467895
3467821
-
Arg
CCG
[ENA]
¡û
>W2110539421
JAGGLB010000023
Bacillota
Paenibacillus eucommiae DSM 26048 [JAGGLB]
138545
138619
+
Arg
CCG
[ENA]
¡û
>W2110554541
JAGIOW010000001
Bacillota
Paenibacillus sp. PvP052 [JAGIOW]
35495
35421
-
Arg
CCG
[ENA]
¡û
>W2110626934
JAHNZO010000014
Bacillota
Paenibacillus sp. SM 69 [JAHNZO]
31915
31841
-
Arg
CCG
[ENA]
¡û
>C231012233
AP025344
Bacillota
Paenibacillus dendritiformis J27TS7 [AP025344]
45595
45521
-
Arg
CCG
-
¡û
>C231139588
CP075175
Bacillota
Paenibacillus sp. 481 [CP075175]
2151094
2151168
+
Arg
CCG
-
¡û
>W2110744630
LDHX01000007
Bacillota
Paenibacillus alvei G25-117 [LDHX]
46281
46355
+
Arg
CCG
[ENA]
¡û
>W2110744715
LDHY01000013
Bacillota
Paenibacillus alvei G25-118 [LDHY]
14512
14438
-
Arg
CCG
[ENA]
¡û
>W2110745256
LDIG01000205
Bacillota
Paenibacillus dendritiformis G25-126 [LDIG]
40300
40226
-
Arg
CCG
[ENA]
¡û
>C231344066
CP094446
Bacillota
Paenibacillus thiaminolyticus Mbale2 [CP094446]
4449120
4449194
+
Arg
CCG
-
¡û
>C231507227
CP106992
Bacillota
Paenibacillus thiaminolyticus SY20 [CP106992]
241602
241528
-
Arg
CCG
-
¡û
>C231638369
CP121215
Bacillota
Paenibacillus elgii L146 [CP121215]
7171557
7171631
+
Arg
CCG
-
¡û
>W2310020967
BSDJ01000029
Bacillota
Paenibacillus tyrfis YSS-72.2.G2 [BSDJ]
69386
69460
+
Arg
CCG
[ENA]
¡û
>W1511185297
JMDX01000028
Bacillota
Paenibacillus sp. E194 [JMDX]
20267
20341
+
Arg
CCG
[ENA]
¡û
>W11163539
AFHW01000136
Bacillota
Paenibacillus elgii B69 [AFHW]
31311
31237
-
Arg
CCG
[ENA]
¡û
>W1610048439
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
30431
30358
-
Arg
CCG
[ENA]
¡û
>W121122902
AMBZ01000002
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
860258
860184
-
Arg
CCG
[ENA]
¡û
>W1610543204
JTHN01000117
Bacillota
Paenibacillus sp. A3 [JTHN]
31915
31841
-
Arg
CCG
[ENA]
¡û
>W1610858587
LQRA01000044
Bacillota
Paenibacillus elgii [LQRA]
31999
31925
-
Arg
CCG
[ENA]
¡û
>W1611052858
MAIS01000037
Bacillota
Paenibacillus sp. KS1 [MAIS]
43885
43811
-
Arg
CCG
[ENA]
¡û
>W1710044949
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
30431
30358
-
Arg
CCG
[ENA]
¡û
>W1710505525
FMTT01000029
Bacillota
Paenibacillus tianmuensis [FMTT]
36132
36206
+
Arg
CCG
[ENA]
¡û
>W1710518365
FNDY01000033
Bacillota
Paenibacillus naphthalenovorans [FNDY]
30501
30428
-
Arg
CCG
[ENA]
¡û
>W1710535944
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
3862149
3862076
-
Arg
CCG
[ENA]
¡û
>W1710567986
FOTE01000022
Bacillota
Paenibacillus sp. 1_12 [FOTE]
33693
33619
-
Arg
CCG
[ENA]
¡û
>W1710608585
FXAZ01000004
Bacillota
Paenibacillus aquistagni 11 [FXAZ]
58096
58022
-
Arg
CCG
[ENA]
¡û
>W1710646335
JTHN01000117
Bacillota
Paenibacillus sp. A3 [JTHN]
31915
31841
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK