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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391204 (92 seq.)
>W1710785514
LJHX01000144
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
4743
4817
+
Thr
TGT
[ENA]
¡û
>W1710803908
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
1013376
1013450
+
Thr
TGT
[ENA]
¡û
>W1710864149
LMFQ01000024
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
257024
257098
+
Thr
TGT
[ENA]
¡û
>W1710873383
LMMS01000031
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
99535
99461
-
Thr
TGT
[ENA]
¡û
>W1710873814
LMNB01000035
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
57394
57468
+
Thr
TGT
[ENA]
¡û
>W1710892725
LNEA01000582
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
716
790
+
Thr
TGT
[ENA]
¡û
>W1710893504
LNEV01000008
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
256556
256630
+
Thr
TGT
[ENA]
¡û
>W131159761
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
4187369
4187295
-
Thr
TGT
[ENA]
¡û
>W131216118
ATVO01000006
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
259073
259147
+
Thr
TGT
[ENA]
¡û
>W131218141
ATXK01000006
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
236959
237033
+
Thr
TGT
[ENA]
¡û
>W1711505835
MKVW01000006
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
331449
331375
-
Thr
TGT
[ENA]
¡û
>w015749
AAPJ01000001
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
193513
193442
-
Thr
TGT
[ENA]
¡û
>WENV180020140
FTCV01002393
[FTCV] metagenome; soil
7669
7595
-
Thr
TGT
[ENA]
¡û
>WENV180023401
FTHV01027908
[FTHV] metagenome; soil
50
124
+
Thr
TGT
[ENA]
¡û
>WENV180023540
FTHY01051825
[FTHY] metagenome; soil
50
124
+
Thr
TGT
[ENA]
¡û
>WENV180033640
FTKL01000915
[FTKL] metagenome; soil
1811
1737
-
Thr
TGT
[ENA]
¡û
>WENV180304630
OBJI01198164
[OBJI] soil metagenome; soil
75
149
+
Thr
TGT
[ENA]
¡û
>WENV180309016
OBJR01433505
[OBJR] soil metagenome; soil
165
239
+
Thr
TGT
[ENA]
¡û
>WENV181166878
OEIU01003654
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3640
3714
+
Thr
TGT
[ENA]
¡û
>WENV181166983
OEIU01005470
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4604
4530
-
Thr
TGT
[ENA]
¡û
>WENV181311797
OFJB01013169
[OFJB] sludge metagenome; sludge
1569
1495
-
Thr
TGT
[ENA]
¡û
>C08002350
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3328741
3328815
+
Thr
TGT
[Ensembl]
¡û
>WENV170269128
CERH01052500
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
73
147
+
Thr
TGT
[ENA]
¡û
>WENV170552058
CXWJ01036433
[CXWJ] wastewater metagenome; activated sludge
3952
3878
-
Thr
TGT
[ENA]
¡û
>WENV170558834
CXWL01094355
[CXWL] groundwater metagenome; biofilm material
129
203
+
Thr
TGT
[ENA]
¡û
>WENV170672495
LAZR01000229
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
53648
53722
+
Thr
TGT
[ENA]
¡û
>WENV170706769
LNAP01006382
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5490
5564
+
Thr
TGT
[ENA]
¡û
>WENV170708948
LNFM01000042
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
256552
256626
+
Thr
TGT
[ENA]
¡û
>WENV170709744
LNFM01000652
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5240
5166
-
Thr
TGT
[ENA]
¡û
>WENV170711001
LNFM01003254
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
25175
25101
-
Thr
TGT
[ENA]
¡û
>WENV170712120
LNFM01009869
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
17584
17510
-
Thr
TGT
[ENA]
¡û
>WENV170714120
LNFM01055445
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1492
1418
-
Thr
TGT
[ENA]
¡û
>WENV171003256
NNBT01002930
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1523
1597
+
Thr
TGT
[ENA]
¡û
>W141733771
JNLC01000018
Alphaproteobacteria
Bosea sp. 117 [JNLC]
5286
5212
-
Thr
TGT
[ENA]
¡û
>W141805307
JPKG01000040
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
90144
90218
+
Thr
TGT
[ENA]
¡û
>W141819020
JQLZ01000002
Alphaproteobacteria
Caulobacter henricii [JQLZ]
88471
88545
+
Thr
TGT
[ENA]
¡û
>W1911705860
QORU01000001
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
530978
530904
-
Thr
TGT
[ENA]
¡û
>W1911708682
QOZQ01000008
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
3394
3468
+
Thr
TGT
[ENA]
¡û
>W1810273180
PSNV01000012
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
57225
57151
-
Thr
TGT
[ENA]
¡û
>W1810474990
QAIR01000020
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
15739
15665
-
Thr
TGT
[ENA]
¡û
>SRA1015448
SRR023846.62794
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
159
85
-
Thr
TGT
[SRA]
>SRA1016087
SRR023846.342329
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
253
+
Thr
TGT
[SRA]
>W2010370353
CAHJWT010000031
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJWT]
6713
6640
-
Thr
TGT
[ENA]
¡û
>W2010437341
JAAAMJ010000012
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
94341
94267
-
Thr
TGT
[ENA]
¡û
>W2010472571
JAAHTB010000015
Alphaproteobacteria
Methylobacterium sp. BTF04 [JAAHTB]
50914
50840
-
Thr
TGT
[ENA]
¡û
>W2010567696
JAATJI010000001
Alphaproteobacteria
Polymorphobacter fuscus DSM 105347 [JAATJI]
1702569
1702495
-
Thr
TGT
[ENA]
¡û
>W2010699359
JACHEY010000007
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
132557
132631
+
Thr
TGT
[ENA]
¡û
>W2010725826
JACIEM010000001
Alphaproteobacteria
Aurantimonas endophytica DSM 103570 [JACIEM]
428440
428514
+
Thr
TGT
[ENA]
¡û
>W2010731145
JACIIV010000007
Alphaproteobacteria
Polymorphobacter multimanifer DSM 102189 [JACIIV]
89185
89111
-
Thr
TGT
[ENA]
¡û
>W2011280463
QORU01000001
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
530978
530904
-
Thr
TGT
[ENA]
¡û
>W2011281820
QOZQ01000008
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
3394
3468
+
Thr
TGT
[ENA]
¡û
>W2011541154
SCPA01000006
Alphaproteobacteria
Rhizobiales bacterium X1A [SCPA]
3657
3731
+
Thr
TGT
[ENA]
¡û
>W2011541285
SCPC01000096
Alphaproteobacteria
Rhizobiales bacterium X2C [SCPC]
2437
2363
-
Thr
TGT
[ENA]
¡û
>W2011541310
SCPD01000007
Alphaproteobacteria
Y(2018) [SCPD]
3657
3731
+
Thr
TGT
[ENA]
¡û
>W2011602672
SIUB01000002
Alphaproteobacteria
Hansschlegelia sp. Dub [SIUB]
27457
27383
-
Thr
TGT
[ENA]
¡û
>W2011784196
UBZM01000017
Alphaproteobacteria
Rhizobiales bacterium [UBZM]
106713
106639
-
Thr
TGT
[ENA]
¡û
>W2012127033
VRVC01000071
Alphaproteobacteria
Methylobacterium sp. WL19 [VRVC]
17368
17442
+
Thr
TGT
[ENA]
¡û
>W2012308135
WEFI01000004
Alphaproteobacteria
Polymorphobacter fuscus D40P [WEFI]
157986
157912
-
Thr
TGT
[ENA]
¡û
>W2012337763
WIOL01000004
Alphaproteobacteria
Polymorphobacter fuscus D40P [WIOL]
157986
157912
-
Thr
TGT
[ENA]
¡û
>W2110034621
BMOX01000030
Alphaproteobacteria
Polymorphobacter multimanifer JCM 18140 [BMOX]
24771
24697
-
Thr
TGT
[ENA]
¡û
>ENV09003442
ADGO01044117
Compost metagenome contig00001
296
370
+
Thr
TGT
[ENA]
¡û
>W2110251034
JACSGS010000001
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
111654
111728
+
Thr
TGT
[ENA]
¡û
>W2110309544
JADDXW010000004
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
127978
128052
+
Thr
TGT
[ENA]
¡û
>W2110432616
JAENHL010000004
Alphaproteobacteria
Aestuariivirga sp. YIM B02566 [JAENHL]
3505
3579
+
Thr
TGT
[ENA]
¡û
>C211011726
AP023361
Alphaproteobacteria
Terrihabitans soli IZ6 [AP023361]
1903862
1903936
+
Thr
TGT
-
¡û
>W2110698668
JAIUIE010000017
Alphaproteobacteria
Mesorhizobium sp. BR1-1-16 [JAIUIE]
57769
57843
+
Thr
TGT
[ENA]
¡û
>C231307424
CP091851
Alphaproteobacteria
Hyphomicrobiales bacterium 7MK25 [CP091851]
988134
988208
+
Thr
TGT
-
¡û
>W2110752793
NKUG01000115
Alphaproteobacteria
Methylobacterium bullatum LMG 24788 [NKUG]
25491
25417
-
Thr
TGT
[ENA]
¡û
>W2110775343
VMOA01000025
Alphaproteobacteria
Methylobacterium sp. W2 [VMOA]
12454
12380
-
Thr
TGT
[ENA]
¡û
>C241058490
CP041636
Alphaproteobacteria
Ferrovibrio terrae K5 [CP041636]
3162012
3161938
-
Thr
TGT
-
¡û
>C241135311
CP049258
Alphaproteobacteria
Nordella sp. HKS 07 [CP049258]
6266659
6266733
+
Thr
TGT
-
¡û
>W2310012831
BPQF01000009
Alphaproteobacteria
Methylobacterium bullatum DSM 21893 [BPQF]
20025
20099
+
Thr
TGT
[ENA]
¡û
>W2310013486
BPQT01000027
Alphaproteobacteria
Methylobacterium marchantiae DSM 21328 [BPQT]
52662
52588
-
Thr
TGT
[ENA]
¡û
>W2310022764
BSFI01000002
Alphaproteobacteria
Hansschlegelia plantiphila VKM B-2347 [BSFI]
370327
370253
-
Thr
TGT
[ENA]
¡û
>W1610056777
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
1564
1490
-
Thr
TGT
[ENA]
¡û
>W1610056864
BBWP01000025
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
44872
44946
+
Thr
TGT
[ENA]
¡û
>W1610649320
LJHX01000144
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
4743
4817
+
Thr
TGT
[ENA]
¡û
>W1610667765
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
1013376
1013450
+
Thr
TGT
[ENA]
¡û
>W1610725805
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
1023774
1023848
+
Thr
TGT
[ENA]
¡û
>W1610726495
LMFQ01000024
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
257024
257098
+
Thr
TGT
[ENA]
¡û
>W1610735023
LMME01000002
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
102068
101994
-
Thr
TGT
[ENA]
¡û
>W1610735729
LMMS01000031
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
99535
99461
-
Thr
TGT
[ENA]
¡û
>W1610736160
LMNB01000035
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
57394
57468
+
Thr
TGT
[ENA]
¡û
>W1610741034
LMRD01000011
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
8073
7999
-
Thr
TGT
[ENA]
¡û
>W1610752991
LNEA01000582
Alphaproteobacteria
Rhizobiales bacterium Ga0077530 [LNEA]
716
790
+
Thr
TGT
[ENA]
¡û
>W1610753770
LNEV01000008
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
256556
256630
+
Thr
TGT
[ENA]
¡û
>W1710053476
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
1564
1490
-
Thr
TGT
[ENA]
¡û
>W1710053563
BBWP01000025
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
44872
44946
+
Thr
TGT
[ENA]
¡û
>W1710535159
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
503895
503821
-
Thr
TGT
[ENA]
¡û
>W1710567188
FOSN01000012
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
37604
37530
-
Thr
TGT
[ENA]
¡û
>W1710583175
FQUP01000001
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
1944566
1944492
-
Thr
TGT
[ENA]
¡û
>W1710601587
FUXL01000001
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
111160
111234
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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