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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391422 (56 seq.)
>W141168423
AXUZ01000009
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
91741
91815
+
Arg
CCT
[ENA]
¡û
>W141233138
BAVL01000018
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
90427
90499
+
Arg
CCT
[ENA]
¡û
>WENV170176732
CEOS01117168
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
848
776
-
Arg
CCT
[ENA]
¡û
>C181056712
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
1202612
1202540
-
Arg
CCT
-
¡û
>C181092486
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
1446552
1446480
-
Arg
CCT
-
¡û
>C191111304
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
3814978
3815050
+
Arg
CCT
-
¡û
>C191112892
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
2308124
2308196
+
Arg
CCT
-
¡û
>C191116268
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
493535
493463
-
Arg
CCT
-
¡û
>C191204320
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
440566
440494
-
Arg
CCT
-
¡û
>C191218987
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
501822
501750
-
Arg
CCT
-
¡û
>W09126961
ACKQ01000007
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
362849
362775
-
Arg
CCT
[ENA]
¡û
>W1810234030
PPED02000001
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
287030
286958
-
Arg
CCT
[ENA]
¡û
>W2010104131
BJYH01000061
Bacteroidota
Chryseobacterium rhizosphaerae NBRC 105248 [BJYH]
6133
6061
-
Arg
CCT
[ENA]
¡û
>W2010747076
JACLDD010000004
Bacteroidota
Chryseobacterium indologenes CI14 [JACLDD]
265481
265409
-
Arg
CCT
[ENA]
¡û
>W2010747284
JACLDG010000004
Bacteroidota
Chryseobacterium indologenes CI17 [JACLDG]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010747383
JACLDH010000007
Bacteroidota
Chryseobacterium indologenes CI18 [JACLDH]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010747427
JACLDI010000004
Bacteroidota
Chryseobacterium indologenes CI19 [JACLDI]
265701
265629
-
Arg
CCT
[ENA]
¡û
>W2010747634
JACLDL010000007
Bacteroidota
Chryseobacterium indologenes CI21 [JACLDL]
169045
168973
-
Arg
CCT
[ENA]
¡û
>W2010747705
JACLDM010000004
Bacteroidota
Chryseobacterium indologenes CI22 [JACLDM]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010747847
JACLDO010000004
Bacteroidota
Chryseobacterium indologenes CI24 [JACLDO]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010747913
JACLDP010000003
Bacteroidota
Chryseobacterium indologenes CI25 [JACLDP]
265489
265417
-
Arg
CCT
[ENA]
¡û
>W2010748061
JACLDR010000004
Bacteroidota
Chryseobacterium indologenes CI27 [JACLDR]
265502
265430
-
Arg
CCT
[ENA]
¡û
>W2010748229
JACLDT010000007
Bacteroidota
Chryseobacterium indologenes CI29 [JACLDT]
90133
90061
-
Arg
CCT
[ENA]
¡û
>W2010748262
JACLDU010000004
Bacteroidota
Chryseobacterium indologenes CI2 [JACLDU]
90228
90300
+
Arg
CCT
[ENA]
¡û
>W2010748343
JACLDV010000004
Bacteroidota
Chryseobacterium indologenes CI30 [JACLDV]
265632
265560
-
Arg
CCT
[ENA]
¡û
>W2010748411
JACLDW010000007
Bacteroidota
Chryseobacterium indologenes CI31 [JACLDW]
90228
90300
+
Arg
CCT
[ENA]
¡û
>W2010748475
JACLDX010000004
Bacteroidota
Chryseobacterium indologenes CI32 [JACLDX]
90228
90300
+
Arg
CCT
[ENA]
¡û
>W2010748617
JACLDZ010000004
Bacteroidota
Chryseobacterium indologenes CI34 [JACLDZ]
265117
265045
-
Arg
CCT
[ENA]
¡û
>W2010748691
JACLEA010000004
Bacteroidota
Chryseobacterium indologenes CI35 [JACLEA]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010748753
JACLEB010000004
Bacteroidota
Chryseobacterium indologenes CI36 [JACLEB]
90228
90300
+
Arg
CCT
[ENA]
¡û
>W2010749026
JACLEF010000004
Bacteroidota
Chryseobacterium indologenes CI3 [JACLEF]
90228
90300
+
Arg
CCT
[ENA]
¡û
>W2010749096
JACLEG010000003
Bacteroidota
Chryseobacterium indologenes CI40 [JACLEG]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010749172
JACLEH010000004
Bacteroidota
Chryseobacterium indologenes CI4 [JACLEH]
265519
265447
-
Arg
CCT
[ENA]
¡û
>W2010749265
JACLEI010000006
Bacteroidota
Chryseobacterium indologenes CI5 [JACLEI]
94935
94863
-
Arg
CCT
[ENA]
¡û
>W2010749311
JACLEJ010000004
Bacteroidota
Chryseobacterium indologenes CI6 [JACLEJ]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010749382
JACLEK010000004
Bacteroidota
Chryseobacterium indologenes CI7 [JACLEK]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2010749452
JACLEL010000004
Bacteroidota
Chryseobacterium indologenes CI8 [JACLEL]
265505
265433
-
Arg
CCT
[ENA]
¡û
>W2010749546
JACLEM010000007
Bacteroidota
Chryseobacterium indologenes CI9 [JACLEM]
91352
91424
+
Arg
CCT
[ENA]
¡û
>W2011388726
RBXB01000002
Bacteroidota
Chryseobacterium defluvii DSM 14219 [RBXB]
886955
886883
-
Arg
CCT
[ENA]
¡û
>W2011505870
RYFC01000003
Bacteroidota
Chryseobacterium arthrosphaerae ED882-96 [RYFC]
1697458
1697529
+
Arg
CCT
[ENA]
¡û
>W2011850860
UIGS01000002
Bacteroidota
Chryseobacterium indologenes NCTC10796 [UIGS]
575731
575659
-
Arg
CCT
[ENA]
¡û
>W2011971184
VCBR01000016
Bacteroidota
Chryseobacterium indologenes 0243 [VCBR]
53683
53611
-
Arg
CCT
[ENA]
¡û
>W2110336592
JADLZS010000001
Bacteroidota
Chryseobacterium indologenes SQ119 [JADLZS]
2469491
2469563
+
Arg
CCT
[ENA]
¡û
>W2110447608
JAESIT010000014
Bacteroidota
Chryseobacterium sp. KMC2 [JAESIT]
143942
143871
-
Arg
CCT
[ENA]
¡û
>W2110610831
JAHKNH010000116
Bacteroidota
Chryseobacterium indologenes JRCGR_CIN-01 [JAHKNH]
12545
12473
-
Arg
CCT
[ENA]
¡û
>W2110656713
JAHWCE010000001
Bacteroidota
Chryseobacterium indologenes D60 [JAHWCE]
1525903
1525831
-
Arg
CCT
[ENA]
¡û
>C211209526
CP065590
Bacteroidota
Chryseobacterium indologenes DSM 16777 [CP065590]
3921454
3921382
-
Arg
CCT
-
¡û
>C211235424
CP067044
Bacteroidota
Chryseobacterium indologenes 3125 [CP067044]
522077
522005
-
Arg
CCT
-
¡û
>C231209115
CP085529
Bacteroidota
Chryseobacterium indologenes 742 [CP085529]
3307721
3307793
+
Arg
CCT
-
¡û
>C231625797
CP119767
Bacteroidota
Chryseobacterium arthrosphaerae FS91703 [CP119767]
743473
743402
-
Arg
CCT
-
¡û
>W1511433358
JUHD01000016
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
16642
16714
+
Arg
CCT
[ENA]
¡û
>W1610205647
FCNN01000142
Bacteroidota
Chryseobacterium indologenes [FCNN]
17605
17531
-
Arg
CCT
[ENA]
¡û
>W1710207148
FCNN01000142
Bacteroidota
Chryseobacterium indologenes [FCNN]
17605
17531
-
Arg
CCT
[ENA]
¡û
>W1710554844
FOIU01000001
Bacteroidota
Chryseobacterium wanjuense [FOIU]
1535470
1535544
+
Arg
CCT
[ENA]
¡û
>W1710565762
FORL01000005
Bacteroidota
Chryseobacterium indologenes [FORL]
90593
90665
+
Arg
CCT
[ENA]
¡û
>W1710606016
FWXM01000001
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
798439
798511
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK