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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391466 (71 seq.)
>W1710818140
LKMZ01000002
Bacteroidota
Flavobacteriaceae bacterium T5-Br10_B2g0 [LKMZ]
29528
29454
-
Thr
GGT
[ENA]
¡û
>W1711385044
MEDR01000029
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
75075
75149
+
Thr
GGT
[ENA]
¡û
>W131223449
AUCB01000016
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
19598
19524
-
Thr
GGT
[ENA]
¡û
>w014015
AAOC01000005
Bacteroidota
Maribacter sp. HTCC2170 HTCC2170 [AAOC]
33635
33559
-
Thr
GGT
[ENA]
¡û
>W141079150
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
19077
19003
-
Thr
GGT
[ENA]
¡û
>W141079175
ATLH01000028
Bacteroidota
Cellulophaga baltica 13 [ATLH]
16075
16001
-
Thr
GGT
[ENA]
¡û
>W141079210
ATLI01000025
Bacteroidota
Cellulophaga baltica 18 [ATLI]
16671
16597
-
Thr
GGT
[ENA]
¡û
>W141079243
ATLJ01000033
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
16752
16678
-
Thr
GGT
[ENA]
¡û
>WENV181392134
OFRW01003583
[OFRW] seawater metagenome; seawater
8
80
+
Thr
GGT
[ENA]
¡û
>WENV182555200
OJCY01009681
[OJCY] seawater metagenome; Sea water
971
897
-
Thr
GGT
[ENA]
¡û
>WENV182586303
OJHK01000043
[OJHK] seawater metagenome; Sea water
94216
94290
+
Thr
GGT
[ENA]
¡û
>WENV182591884
OJIO01011504
[OJIO] seawater metagenome; Sea water
181
253
+
Thr
GGT
[ENA]
¡û
>WENV183626839
OOGK01003722
[OOGK] marine metagenome; seawater
8
80
+
Thr
GGT
[ENA]
¡û
>WENV183630285
OOGS01001094
[OOGS] marine metagenome; seawater
1431
1359
-
Thr
GGT
[ENA]
¡û
>WENV183704928
PDWI01000786
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22486
22414
-
Thr
GGT
[ENA]
¡û
>WENV183719824
PDWJ01021066
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3630
3702
+
Thr
GGT
[ENA]
¡û
>WENV170130545
CENR01009465
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
128
202
+
Thr
GGT
[ENA]
¡û
>WENV170568351
FLMP01031792
[FLMP] seawater metagenome; seawater
8
82
+
Thr
GGT
[ENA]
¡û
>WENV170664933
JYMV01021174
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
76967
77041
+
Thr
GGT
[ENA]
¡û
>WENV170682592
LFIK01000447
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
29528
29454
-
Thr
GGT
[ENA]
¡û
>WENV170782751
MAAC01011209
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
66234
66162
-
Thr
GGT
[ENA]
¡û
>WENV170782838
MAAC01011315
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
71725
71653
-
Thr
GGT
[ENA]
¡û
>WENV170782847
MAAC01011319
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3951
3879
-
Thr
GGT
[ENA]
¡û
>C181067236
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
22043
21971
-
Thr
GGT
-
¡û
>W141807614
JPOO01000003
Bacteroidota
Arenibacter algicola [JPOO]
1353671
1353597
-
Thr
GGT
[ENA]
¡û
>W141812198
JPZT01000004
Bacteroidota
Altibacter lentus [JPZT]
1115957
1115883
-
Thr
GGT
[ENA]
¡û
>W1810120888
PHTY01000001
Bacteroidota
Ulvibacter sp. MAR_2010_11 MAR_2010_11 Mar_2010_11 [PHTY]
1938198
1938270
+
Thr
GGT
[ENA]
¡û
>W1810579879
QERF01000008
Bacteroidota
Winogradskyella tangerina M1309 [QERF]
20929
20857
-
Thr
GGT
[ENA]
¡û
>W1810659332
QJJZ01000008
Bacteroidota
Arenibacter sp. ARW7G5Y1 [QJJZ]
206145
206217
+
Thr
GGT
[ENA]
¡û
>W1810693680
QLLN01000010
Bacteroidota
Arenibacter echinorum DSM 23522 [QLLN]
92227
92299
+
Thr
GGT
[ENA]
¡û
>W1810735850
QOLC01000106
Bacteroidota
Candidatus Ulvibacter alkanivorans Bin25-node4 [QOLC]
4256
4184
-
Thr
GGT
[ENA]
¡û
>W1810758151
QPIE01000002
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
250051
250123
+
Thr
GGT
[ENA]
¡û
>W1810914348
QVON01000004
Bacteroidota
Arenibacter sp. P308M17 [QVON]
27071
26999
-
Thr
GGT
[ENA]
¡û
>C151061195
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
2122677
2122751
+
Thr
GGT
[Ensembl]
¡û
>C151062870
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
2132387
2132461
+
Thr
GGT
[Ensembl]
¡û
>W2010520125
JAANAS010000001
Bacteroidota
Psychroflexus sp. C1 [JAANAS]
86753
86681
-
Thr
GGT
[ENA]
¡û
>W2010578363
JAAXCQ010000021
Bacteroidota
Arenibacter sp. 6A1 [JAAXCQ]
72402
72474
+
Thr
GGT
[ENA]
¡û
>W2010613324
JABSNO010000037
Bacteroidota
Chryseobacterium sp. 16F [JABSNO]
13627
13555
-
Thr
GGT
[ENA]
¡û
>W2011479256
RQPJ01000015
Bacteroidota
Arenibacter sp. GUO666 [RQPJ]
17162
17090
-
Thr
GGT
[ENA]
¡û
>W2012030177
VHIF01000001
Bacteroidota
Arenibacter palladensis MAR_2009_79 [VHIF]
467421
467493
+
Thr
GGT
[ENA]
¡û
>W2012039296
VIKU02000012
Bacteroidota
Flavobacteriaceae bacterium TP-CH-4 [VIKU]
16473
16401
-
Thr
GGT
[ENA]
¡û
>W2012040431
VIQP01000012
Bacteroidota
Cellulophaga baltica 14 [VIQP]
16705
16633
-
Thr
GGT
[ENA]
¡û
>W2012157100
VVIN01000015
Bacteroidota
Arenibacter sp. JC631 [VVIN]
26250
26178
-
Thr
GGT
[ENA]
¡û
>W2012352393
WJPK01000001
Bacteroidota
Kriegella sp. EG-1 [WJPK]
1783774
1783702
-
Thr
GGT
[ENA]
¡û
>W2012357198
WKJH01000022
Bacteroidota
Maribacter luteus RZ05 [WKJH]
86390
86462
+
Thr
GGT
[ENA]
¡û
>W2012435372
WTLE01000035
Bacteroidota
Cellulophaga sp. Z1A5H [WTLE]
17286
17214
-
Thr
GGT
[ENA]
¡û
>W2110046614
BMWP01000002
Bacteroidota
Arenibacter certesii KCTC 12113 [BMWP]
19756
19684
-
Thr
GGT
[ENA]
¡û
>W2110331149
JADKYY010000014
Bacteroidota
Chryseobacterium sp. GCR5 [JADKYY]
59120
59048
-
Thr
GGT
[ENA]
¡û
>W2110371241
JADPRW010000037
Bacteroidota
Cellulophaga sp. E16_2 [JADPRW]
96204
96276
+
Thr
GGT
[ENA]
¡û
>W2110612691
JAHKQN010000005
Bacteroidota
Cellulophaga baltica B2M06 [JAHKQN]
22648
22576
-
Thr
GGT
[ENA]
¡û
>C201221018
CP049057
Bacteroidota
Flavobacteriaceae bacterium RR4-40 [CP049057]
1250707
1250635
-
Thr
GGT
-
¡û
>C211118296
CP058989
Bacteroidota
Cellulophaga sp. HaHa_2_1 [CP058989]
3967650
3967722
+
Thr
GGT
-
¡û
>C231320454
CP092597
Bacteroidota
Cellulophaga baltica 4 [CP092597]
1992020
1991948
-
Thr
GGT
-
¡û
>C241081688
CP043633
Bacteroidota
Nonlabens sp. Ci31 [CP043633]
427162
427090
-
Thr
GGT
-
¡û
>C241114943
CP047027
Bacteroidota
Cellulophaga sp. L1A9 [CP047027]
2901944
2902016
+
Thr
GGT
-
¡û
>C10106872
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
33672
33598
-
Thr
GGT
[Ensembl]
¡û
>C11104713
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2691028
2691102
+
Thr
GGT
[Ensembl]
¡û
>W1511320938
JQCT01000020
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
16310
16236
-
Thr
GGT
[ENA]
¡û
>W1511433238
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3538700
3538774
+
Thr
GGT
[ENA]
¡û
>C161000298
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
1556098
1556170
+
Thr
GGT
[Ensembl]
¡û
>W1610082700
BDGL01000023
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
31901
31827
-
Thr
GGT
[ENA]
¡û
>W1610682439
LKMZ01000002
Bacteroidota
Flavobacteriaceae bacterium T5-Br10_B2g0 [LKMZ]
29528
29454
-
Thr
GGT
[ENA]
¡û
>W1610900915
LRXL01000001
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
21753
21681
-
Thr
GGT
[ENA]
¡û
>W1611013083
LXYE01000006
Bacteroidota
Labilibacter marinus [LXYE]
64891
64965
+
Thr
GGT
[ENA]
¡û
>W1710081874
BDGL01000023
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
31901
31827
-
Thr
GGT
[ENA]
¡û
>W1710514697
FNBD01000013
Bacteroidota
Cellulophaga baltica [FNBD]
89730
89804
+
Thr
GGT
[ENA]
¡û
>W1710521994
FNGV01000017
Bacteroidota
Kriegella aquimaris [FNGV]
95256
95330
+
Thr
GGT
[ENA]
¡û
>W1710583585
FQUX01000006
Bacteroidota
Arenibacter palladensis [FQUX]
37305
37231
-
Thr
GGT
[ENA]
¡û
>W1710587904
FQYX01000015
Bacteroidota
Arenibacter nanhaiticus [FQYX]
21668
21594
-
Thr
GGT
[ENA]
¡û
>W1710606142
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
27419
27345
-
Thr
GGT
[ENA]
¡û
>W1710608035
FXAO01000005
Bacteroidota
Arenibacter troitsensis [FXAO]
37111
37037
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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