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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.392593 (146 seq.)
>W1711580524
MNTC01000102
Bacillota
Firmicutes bacterium CAG:552_39_19 [MNTC]
46383
46309
-
Glu
TTC
[ENA]
¡û
>W1712041639
NFLE01000042
Bacillota
Lachnoclostridium sp. An14 [NFLE]
873
944
+
Glu
TTC
[ENA]
¡û
>W1712041660
NFLE01000069
Bacillota
Lachnoclostridium sp. An14 [NFLE]
306
377
+
Glu
TTC
[ENA]
¡û
>WENV180199227
OBAE01000053
[OBAE] human gut metagenome; human gut
210
282
+
Glu
TTC
[ENA]
¡û
>WENV180213750
OBAO01006524
[OBAO] human gut metagenome; human gut
210
282
+
Glu
TTC
[ENA]
¡û
>WENV180216745
OBAR01000116
[OBAR] human gut metagenome; human gut
82
154
+
Glu
TTC
[ENA]
¡û
>WENV180287012
OBII01068308
[OBII] human gut metagenome; feces
59
131
+
Glu
TTC
[ENA]
¡û
>WENV180518549
OCHD01078734
[OCHD] human gut metagenome; human gut
273
201
-
Glu
TTC
[ENA]
¡û
>WENV180529598
OCHK01000116
[OCHK] human gut metagenome; human gut
87
159
+
Glu
TTC
[ENA]
¡û
>WENV180532241
OCHL01000298
[OCHL] human gut metagenome; human gut
605
677
+
Glu
TTC
[ENA]
¡û
>WENV180537420
OCHO01000037
[OCHO] human gut metagenome; human gut
159
231
+
Glu
TTC
[ENA]
¡û
>WENV180654471
OCVV010325189
[OCVV] gut metagenome; gut
334
408
+
Glu
TTC
[ENA]
¡û
>WENV180654472
OCVV010325189
[OCVV] gut metagenome; gut
334
408
+
Glu
TTC
[ENA]
¡û
>WENV180677187
OCVV011617114
[OCVV] gut metagenome; gut
92
166
+
Glu
TTC
[ENA]
¡û
>WENV180677188
OCVV011617114
[OCVV] gut metagenome; gut
92
166
+
Glu
TTC
[ENA]
¡û
>WENV180724335
ODGR01000479
[ODGR] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV180767636
ODIG01000291
[ODIG] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV180768128
ODIG01002976
[ODIG] human metagenome; G_DNA_Tongue dorsum
155
81
-
Glu
TTC
[ENA]
¡û
>WENV180769834
ODIG01183031
[ODIG] human metagenome; G_DNA_Tongue dorsum
237
163
-
Glu
TTC
[ENA]
¡û
>WENV180789233
ODIS01342350
[ODIS] human metagenome; G_DNA_Supragingival plaque
115
41
-
Glu
TTC
[ENA]
¡û
>WENV180792446
ODIW01000483
[ODIW] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV180799987
ODJC01048978
[ODJC] human metagenome; G_DNA_Stool
529
603
+
Glu
TTC
[ENA]
¡û
>WENV180802664
ODJE01005655
[ODJE] human metagenome; G_DNA_Tongue dorsum
894
968
+
Glu
TTC
[ENA]
¡û
>WENV180815467
ODJP01000478
[ODJP] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV180819794
ODJR01000518
[ODJR] human metagenome; G_DNA_Tongue dorsum
32435
32361
-
Glu
TTC
[ENA]
¡û
>WENV180853398
ODKW01095320
[ODKW] human metagenome; G_DNA_Tongue dorsum
2
76
+
Glu
TTC
[ENA]
¡û
>WENV180916924
ODTD01002482
[ODTD] human metagenome; G_DNA_Tongue dorsum
3508
3434
-
Glu
TTC
[ENA]
¡û
>WENV180920333
ODTH01003786
[ODTH] human metagenome; G_DNA_Tongue dorsum
5536
5462
-
Glu
TTC
[ENA]
¡û
>WENV180942182
ODTZ01054922
[ODTZ] human metagenome; G_DNA_Stool
200
272
+
Glu
TTC
[ENA]
¡û
>WENV180968514
ODUT01032088
[ODUT] human metagenome; G_DNA_Tongue dorsum
210
136
-
Glu
TTC
[ENA]
¡û
>WENV180976464
ODUY01117696
[ODUY] human metagenome; G_DNA_Supragingival plaque
458
384
-
Glu
TTC
[ENA]
¡û
>WENV180986275
ODVJ01088042
[ODVJ] human metagenome; G_DNA_Tongue dorsum
346
272
-
Glu
TTC
[ENA]
¡û
>WENV180989741
ODVN01000052
[ODVN] human metagenome; G_DNA_Tongue dorsum
115316
115390
+
Glu
TTC
[ENA]
¡û
>WENV180990179
ODVN01000573
[ODVN] human metagenome; G_DNA_Tongue dorsum
32007
31933
-
Glu
TTC
[ENA]
¡û
>WENV181013279
ODWN01000205
[ODWN] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV181032855
ODXN01000911
[ODXN] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV181040553
ODXS01000191
[ODXS] human metagenome; G_DNA_Tongue dorsum
36988
36914
-
Glu
TTC
[ENA]
¡û
>WENV181059351
ODYM01000777
[ODYM] human metagenome; G_DNA_Tongue dorsum
10297
10223
-
Glu
TTC
[ENA]
¡û
>WENV181060420
ODYM01168157
[ODYM] human metagenome; G_DNA_Tongue dorsum
2
76
+
Glu
TTC
[ENA]
¡û
>WENV181086488
OEAY01000926
[OEAY] human metagenome; G_DNA_Tongue dorsum
13467
13541
+
Glu
TTC
[ENA]
¡û
>WENV181087373
OEAY01032740
[OEAY] human metagenome; G_DNA_Tongue dorsum
236
162
-
Glu
TTC
[ENA]
¡û
>WENV181095551
OEBY01012177
[OEBY] human metagenome; G_DNA_Tongue dorsum
2682
2608
-
Glu
TTC
[ENA]
¡û
>WENV181097798
OECA01027902
[OECA] human metagenome; G_DNA_Tongue dorsum
829
903
+
Glu
TTC
[ENA]
¡û
>WENV181097820
OECA01031531
[OECA] human metagenome; G_DNA_Tongue dorsum
237
163
-
Glu
TTC
[ENA]
¡û
>WENV181113947
OEEO01000018
[OEEO] human metagenome; G_DNA_Supragingival plaque
114351
114425
+
Glu
TTC
[ENA]
¡û
>WENV181138640
OEGN01000305
[OEGN] human metagenome; G_DNA_Tongue dorsum
58
132
+
Glu
TTC
[ENA]
¡û
>WENV181139551
OEGN01013196
[OEGN] human metagenome; G_DNA_Tongue dorsum
1980
2054
+
Glu
TTC
[ENA]
¡û
>WENV181158901
OEIH01015974
[OEIH] human metagenome; G_DNA_Supragingival plaque
798
724
-
Glu
TTC
[ENA]
¡û
>WENV181241816
OFFF01007740
[OFFF] mouse gut metagenome; faeces
2415
2489
+
Glu
TTC
[ENA]
¡û
>WENV181446591
OGDU01000046
[OGDU] metagenome; Human gut stool
116340
116268
-
Glu
TTC
[ENA]
¡û
>WENV181462495
OGEN01007521
[OGEN] metagenome; Human gut stool
1445
1519
+
Glu
TTC
[ENA]
¡û
>WENV181529768
OGHM01005927
[OGHM] metagenome; Human gut stool
451
380
-
Glu
TTC
[ENA]
¡û
>WENV181530623
OGHO01000063
[OGHO] metagenome; Human gut stool
62
134
+
Glu
TTC
[ENA]
¡û
>WENV181532258
OGHO01064864
[OGHO] metagenome; Human gut stool
9
83
+
Glu
TTC
[ENA]
¡û
>WENV181532542
OGHP01002375
[OGHP] metagenome; Human gut stool
358
430
+
Glu
TTC
[ENA]
¡û
>WENV181543832
OGIF01000018
[OGIF] metagenome; Human gut stool
95268
95196
-
Glu
TTC
[ENA]
¡û
>WENV181576469
OGJV01009467
[OGJV] metagenome; Human gut stool
62
133
+
Glu
TTC
[ENA]
¡û
>WENV181603453
OGLI01000136
[OGLI] metagenome; Human gut stool
62
134
+
Glu
TTC
[ENA]
¡û
>WENV181622720
OGMG01023454
[OGMG] metagenome; Human gut stool
354
425
+
Glu
TTC
[ENA]
¡û
>WENV181631267
OGMR01005048
[OGMR] metagenome; Human gut stool
3200
3128
-
Glu
TTC
[ENA]
¡û
>WENV181729348
OGQB01004073
[OGQB] human gut metagenome; faeces
61
133
+
Glu
TTC
[ENA]
¡û
>WENV181822941
OGUH01000355
[OGUH] human gut metagenome; fecal sample 3 from infant 3
4307
4233
-
Glu
TTC
[ENA]
¡û
>WENV181865347
OGWU01020832
[OGWU] human gut metagenome; faeces
457
531
+
Glu
TTC
[ENA]
¡û
>WENV182047724
OHDY01000873
[OHDY] human gut metagenome; feces
431
502
+
Glu
TTC
[ENA]
¡û
>WENV182095490
OHHL01024292
[OHHL] human gut metagenome; feces
1
72
+
Glu
TTC
[ENA]
¡û
>WENV182106009
OHIH01007598
[OHIH] human gut metagenome; feces
534
607
+
Glu
TTC
[ENA]
¡û
>WENV182154883
OHLP01023443
[OHLP] human gut metagenome; feces
59
130
+
Glu
TTC
[ENA]
¡û
>WENV182311547
OHXS01018034
[OHXS] human gut metagenome; feces
159
231
+
Glu
TTC
[ENA]
¡û
>WENV182336919
OHZT01010127
[OHZT] human gut metagenome; feces
424
352
-
Glu
TTC
[ENA]
¡û
>WENV182398089
OIEN01000378
[OIEN] human gut metagenome; human gut
2668
2742
+
Glu
TTC
[ENA]
¡û
>WENV182415144
OIGB01004690
[OIGB] human gut metagenome; human gut
1041
970
-
Glu
TTC
[ENA]
¡û
>WENV182428126
OIHY01009098
[OIHY] human gut metagenome; human gut
569
498
-
Glu
TTC
[ENA]
¡û
>WENV182451391
OILZ01014859
[OILZ] human gut metagenome; human gut
280
209
-
Glu
TTC
[ENA]
¡û
>WENV182597306
OJJA01022128
[OJJA] metagenome; faeces
548
476
-
Glu
TTC
[ENA]
¡û
>WENV182599152
OJJE01000889
[OJJE] metagenome; faeces
704
776
+
Glu
TTC
[ENA]
¡û
>WENV182607960
OJJU01065061
[OJJU] metagenome; faeces
478
552
+
Glu
TTC
[ENA]
¡û
>WENV182610176
OJJV01061498
[OJJV] metagenome; faeces
524
452
-
Glu
TTC
[ENA]
¡û
>WENV182625201
OJKP01000037
[OJKP] metagenome; faeces
115455
115383
-
Glu
TTC
[ENA]
¡û
>WENV182653087
OJMH01099481
[OJMH] human gut metagenome; feces
558
484
-
Glu
TTC
[ENA]
¡û
>WENV182737363
OJQI01003135
[OJQI] human gut metagenome; stool sample
3697
3769
+
Glu
TTC
[ENA]
¡û
>WENV182873154
OKRW01000048
[OKRW] human gut metagenome; faeces
106273
106347
+
Glu
TTC
[ENA]
¡û
>WENV182928984
OKUP01000112
[OKUP] human gut metagenome; feces
1152
1224
+
Glu
TTC
[ENA]
¡û
>WENV182972772
OKXI01086036
[OKXI] human gut metagenome; human gut
491
419
-
Glu
TTC
[ENA]
¡û
>WENV182974988
OKXS01014557
[OKXS] human gut metagenome; human gut
436
507
+
Glu
TTC
[ENA]
¡û
>WENV182987218
OLAB01008187
[OLAB] human gut metagenome; human gut
742
671
-
Glu
TTC
[ENA]
¡û
>WENV182993863
OLBA01012871
[OLBA] human gut metagenome; human gut
132
203
+
Glu
TTC
[ENA]
¡û
>WENV183004811
OLCW01004529
[OLCW] human gut metagenome; human gut
264
335
+
Glu
TTC
[ENA]
¡û
>WENV183068051
OLIQ01001455
[OLIQ] metagenome; faeces
231
303
+
Glu
TTC
[ENA]
¡û
>WENV183069369
OLIR01000039
[OLIR] metagenome; faeces
231
303
+
Glu
TTC
[ENA]
¡û
>WENV183126840
OLNY01045202
[OLNY] human gut metagenome; faeces
1049
1120
+
Glu
TTC
[ENA]
¡û
>WENV183239054
OLRA01000178
[OLRA] human gut metagenome; faeces
88659
88587
-
Glu
TTC
[ENA]
¡û
>WENV183273769
OLRX01048454
[OLRX] human gut metagenome; faeces
60
134
+
Glu
TTC
[ENA]
¡û
>WENV183406873
OMAB01003743
[OMAB] human gut metagenome; feces
1577
1505
-
Glu
TTC
[ENA]
¡û
>WENV183413370
OMAN01002081
[OMAN] human gut metagenome; feces
31
105
+
Glu
TTC
[ENA]
¡û
>WENV183755922
PPYE01116072
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1049
975
-
Glu
TTC
[ENA]
¡û
>WENV170033700
CDYK01031534
[CDYK] gut metagenome; human stools
67766
67694
-
Glu
TTC
[ENA]
¡û
>WENV170059356
CDZH01044371
[CDZH] gut metagenome; human stools
364
436
+
Glu
TTC
[ENA]
¡û
>WENV170777932
LXOW01339290
[LXOW] bovine gut metagenome; Cow rumen
179
107
-
Glu
TTC
[ENA]
¡û
>C191211273
LR134472
Bacillota
Parvimonas micra NCTC11808 [LR134472]
494842
494768
-
Glu
TTC
-
¡û
>C191211294
LR134472
Bacillota
Parvimonas micra NCTC11808 [LR134472]
202893
202819
-
Glu
TTC
-
¡û
>W1910229104
FNWE01000002
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
1069660
1069586
-
Glu
TTC
[ENA]
¡û
>W1910237764
FPLH01000007
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
2797
2871
+
Glu
TTC
[ENA]
¡û
>W1910237770
FPLH01000013
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
142257
142331
+
Glu
TTC
[ENA]
¡û
>W1910237795
FPLH01000014
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
149529
149455
-
Glu
TTC
[ENA]
¡û
>W1911498541
OCTU01000004
Bacillota
Urinacoccus sp. Marseille-P3926 [OCTU]
92317
92243
-
Glu
TTC
[ENA]
¡û
>W1810865897
QTXG01000022
Bacillota
Clostridium sp. AF16-25 [QTXG]
151
223
+
Glu
TTC
[ENA]
¡û
>W1810866043
QTXJ01000064
Bacillota
Clostridium sp. AF15-6B [QTXJ]
9070
8998
-
Glu
TTC
[ENA]
¡û
>W1810866084
QTXK01000009
Bacillota
Clostridium sp. AF15-49 [QTXK]
102761
102689
-
Glu
TTC
[ENA]
¡û
>W1810872063
QUDL01000027
Bacillota
Clostridium sp. AF43-10 [QUDL]
11468
11396
-
Glu
TTC
[ENA]
¡û
>W1810875290
QUFV01000006
Bacillota
Clostridium sp. AF23-8 [QUFV]
125706
125634
-
Glu
TTC
[ENA]
¡û
>W1810882237
QUKW01000010
Bacillota
Clostridium sp. OM08-29 [QUKW]
191
263
+
Glu
TTC
[ENA]
¡û
>W2010149649
CAACYI010000001
Bacillota
Anaerococcus prevotii 3012STDY7089603 [CAACYI]
1379096
1379022
-
Glu
TTC
[ENA]
¡û
>W2010149662
CAACYI010000001
Bacillota
Anaerococcus prevotii 3012STDY7089603 [CAACYI]
1031659
1031585
-
Glu
TTC
[ENA]
¡û
>W2010383080
FNWE01000002
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
1069660
1069586
-
Glu
TTC
[ENA]
¡û
>W2010386973
FPLH01000007
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
2797
2871
+
Glu
TTC
[ENA]
¡û
>W2010386979
FPLH01000013
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
142257
142331
+
Glu
TTC
[ENA]
¡û
>W2010387004
FPLH01000014
Bacillota
Urinacoccus massiliensis FC2 [FPLH]
149529
149455
-
Glu
TTC
[ENA]
¡û
>W2011159445
OCTU01000004
Bacillota
Urinacoccus sp. Marseille-P3926 [OCTU]
92317
92243
-
Glu
TTC
[ENA]
¡û
>W2110358257
JADNPP010000010
Bacillota
Clostridium sp. D43t1_170807_D5 [JADNPP]
232
304
+
Glu
TTC
[ENA]
¡û
>W2110370465
JADPLX010000009
Bacillota
Clostridium sp. 1001270H_150608_G6 [JADPLX]
210
282
+
Glu
TTC
[ENA]
¡û
>W2110618857
JAHLNM010000007
Bacillota
Tissierella praeacuta N14 [JAHLNM]
59175
59101
-
Glu
TTC
[ENA]
¡û
>W2110618868
JAHLNM010000021
Bacillota
Tissierella praeacuta N14 [JAHLNM]
25708
25634
-
Glu
TTC
[ENA]
¡û
>W2110618888
JAHLNM010000037
Bacillota
Tissierella praeacuta N14 [JAHLNM]
594
668
+
Glu
TTC
[ENA]
¡û
>W2110619865
JAHLOH010000027
Bacillota
Tissierella carlieri N39 [JAHLOH]
37095
37169
+
Glu
TTC
[ENA]
¡û
>W2110619876
JAHLOH010000044
Bacillota
Tissierella carlieri N39 [JAHLOH]
502
576
+
Glu
TTC
[ENA]
¡û
>W2110619900
JAHLOH010000053
Bacillota
Tissierella carlieri N39 [JAHLOH]
609
683
+
Glu
TTC
[ENA]
¡û
>W2110622138
JAHLPZ010000010
Bacillota
Eubacterium sp. MSJ-21 [JAHLPZ]
257
328
+
Glu
TTC
[ENA]
¡û
>C211135907
CP060632
Bacillota
Lachnospiraceae bacterium NSJ-4 [CP060632]
382867
382939
+
Glu
TTC
-
¡û
>W2110738960
JAJEQT010000007
Bacillota
Coprococcus sp. CLA-AA-H212 [JAJEQT]
172631
172559
-
Glu
TTC
[ENA]
¡û
>C231153145
CP076562
Bacillota
Eubacterium sp. MSJ-33 [CP076562]
1617825
1617754
-
Glu
TTC
-
¡û
>C231436586
CP101409
Bacillota
Parvimonas micra PM89KC-G-1 [CP101409]
1093283
1093209
-
Glu
TTC
-
¡û
>C231436627
CP101410
Bacillota
Parvimonas micra PM89KC-G-2 [CP101410]
1093083
1093009
-
Glu
TTC
-
¡û
>C231631596
CP120677
Bacillota
Tissierella sp. Yu-01 [CP120677]
477535
477609
+
Glu
TTC
-
¡û
>C231631626
CP120677
Bacillota
Tissierella sp. Yu-01 [CP120677]
1571485
1571411
-
Glu
TTC
-
¡û
>C231631645
CP120677
Bacillota
Tissierella sp. Yu-01 [CP120677]
909802
909728
-
Glu
TTC
-
¡û
>W11173971
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
644423
644497
+
Glu
TTC
[ENA]
¡û
>W11173989
AFUH01000001
Bacillota
Peptoniphilus sp. oral taxon 375 oral taxon 375 str. F0436 [AFUH]
1822739
1822665
-
Glu
TTC
[ENA]
¡û
>W11174526
AFUS01000005
Bacillota
Parvimonas sp. oral taxon 393 oral taxon 393 str. F0440 [AFUS]
529963
529889
-
Glu
TTC
[ENA]
¡û
>W11174547
AFUS01000005
Bacillota
Parvimonas sp. oral taxon 393 oral taxon 393 str. F0440 [AFUS]
287720
287646
-
Glu
TTC
[ENA]
¡û
>W121112610
ALNL01000036
Bacillota
Mogibacterium sp. CM50 [ALNL]
35251
35177
-
Glu
TTC
[ENA]
¡û
>W1610058089
BBZO01000035
Bacillota
Clostridia bacterium UC5.1-2E3 [BBZO]
74
146
+
Glu
TTC
[ENA]
¡û
>W1610095165
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
604
678
+
Glu
TTC
[ENA]
¡û
>W1610095204
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
590047
589973
-
Glu
TTC
[ENA]
¡û
>W1710054848
BBZO01000035
Bacillota
Clostridia bacterium UC5.1-2E3 [BBZO]
74
146
+
Glu
TTC
[ENA]
¡û
>W1710097960
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
604
678
+
Glu
TTC
[ENA]
¡û
>W1710097999
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
590047
589973
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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