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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.392603 (50 seq.)
>WENV180014026
FPIC01031883
[FPIC] soil metagenome; Soil
87
13
-
Glu
TTC
[ENA]
¡û
>WENV180015210
FQKF010426119
[FQKF] soil metagenome; Soil
1
72
+
Glu
TTC
[ENA]
¡û
>WENV180323426
OBKR01030987
[OBKR] human gut metagenome; feces
992
1066
+
Glu
TTC
[ENA]
¡û
>WENV180543332
OCHT01110492
[OCHT] human gut metagenome; human gut
45
119
+
Glu
TTC
[ENA]
¡û
>WENV180609631
OCPV01006216
[OCPV] human gut metagenome; human gut
2725
2799
+
Glu
TTC
[ENA]
¡û
>WENV180886816
ODME01215866
[ODME] human metagenome; G_DNA_Stool
82
154
+
Glu
TTC
[ENA]
¡û
>WENV180894519
ODMR01116187
[ODMR] human metagenome; G_DNA_Stool
329
403
+
Glu
TTC
[ENA]
¡û
>WENV180956502
ODUK01001563
[ODUK] human metagenome; G_DNA_Stool
14978
15050
+
Glu
TTC
[ENA]
¡û
>WENV181029001
ODXE01063585
[ODXE] human metagenome; G_DNA_Stool
87
15
-
Glu
TTC
[ENA]
¡û
>WENV181093692
OEBW01007194
[OEBW] human metagenome; G_DNA_Stool
2329
2401
+
Glu
TTC
[ENA]
¡û
>WENV181416491
OGCL01093246
[OGCL] hot springs metagenome; Hot spring water
101
173
+
Glu
TTC
[ENA]
¡û
>WENV181452039
OGDY01059686
[OGDY] metagenome; Human gut stool
230
158
-
Glu
TTC
[ENA]
¡û
>WENV181532090
OGHO01031482
[OGHO] metagenome; Human gut stool
983
1055
+
Glu
TTC
[ENA]
¡û
>W141152181
AXBP01000011
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
534304
534230
-
Glu
TTC
[ENA]
¡û
>W141152192
AXBP01000015
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
1584
1658
+
Glu
TTC
[ENA]
¡û
>W141152193
AXBP01000015
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
40161
40235
+
Glu
TTC
[ENA]
¡û
>WENV182655237
OJMI01024535
[OJMI] human gut metagenome; feces
716
790
+
Glu
TTC
[ENA]
¡û
>WENV182969491
OKXB01031333
[OKXB] human gut metagenome; human gut
237
311
+
Glu
TTC
[ENA]
¡û
>WENV170050163
CDZB01016623
[CDZB] gut metagenome; human stools
235
309
+
Glu
TTC
[ENA]
¡û
>WENV170063463
CDZK01016028
[CDZK] gut metagenome; human stools
172
98
-
Glu
TTC
[ENA]
¡û
>WENV170101677
CEAR01041499
[CEAR] gut metagenome; human stools
713
639
-
Glu
TTC
[ENA]
¡û
>WENV170109316
CECA01072450
[CECA] gut metagenome; human stools
76
2
-
Glu
TTC
[ENA]
¡û
>WENV170638160
JFBN01432819
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1243
1169
-
Glu
TTC
[ENA]
¡û
>WENV170642674
JFJP01043287
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1389
1463
+
Glu
TTC
[ENA]
¡û
>C191018687
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1888363
1888435
+
Glu
TTC
-
¡û
>C191018688
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1926940
1927012
+
Glu
TTC
-
¡û
>C191018724
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
883825
883753
-
Glu
TTC
-
¡û
>W1910548607
FZOQ01000004
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
231333
231261
-
Glu
TTC
[ENA]
¡û
>W1910548629
FZOQ01000030
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
56627
56699
+
Glu
TTC
[ENA]
¡û
>W1910548633
FZOQ01000036
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
23062
23134
+
Glu
TTC
[ENA]
¡û
>W1911749355
QWGE01000002
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
823225
823297
+
Glu
TTC
[ENA]
¡û
>W1911749356
QWGE01000002
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
847530
847604
+
Glu
TTC
[ENA]
¡û
>W1911749375
QWGE01000005
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
53023
53095
+
Glu
TTC
[ENA]
¡û
>W1810400062
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
6884409
6884337
-
Glu
TTC
[ENA]
¡û
>W1810400084
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
902059
901987
-
Glu
TTC
[ENA]
¡û
>W1810483265
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
2903345
2903417
+
Glu
TTC
[ENA]
¡û
>W1810483268
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
3671379
3671451
+
Glu
TTC
[ENA]
¡û
>W2011318600
QWGE01000002
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
823225
823297
+
Glu
TTC
[ENA]
¡û
>W2011318601
QWGE01000002
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
847530
847604
+
Glu
TTC
[ENA]
¡û
>W2011318620
QWGE01000005
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
53023
53095
+
Glu
TTC
[ENA]
¡û
>W2012023198
VFRQ01000001
Bacteroidota
Pontibacter sp. HB172049 [VFRQ]
507384
507456
+
Glu
TTC
[ENA]
¡û
>W2012023234
VFRQ01000014
Bacteroidota
Pontibacter sp. HB172049 [VFRQ]
37330
37402
+
Glu
TTC
[ENA]
¡û
>W2012023235
VFRQ01000014
Bacteroidota
Pontibacter sp. HB172049 [VFRQ]
54974
55046
+
Glu
TTC
[ENA]
¡û
>C211101489
CP055156
Bacteroidota
Adhaeribacter swui KCTC 52873 [CP055156]
10993
11065
+
Glu
TTC
-
¡û
>C211101503
CP055156
Bacteroidota
Adhaeribacter swui KCTC 52873 [CP055156]
5677645
5677717
+
Glu
TTC
-
¡û
>C241126881
CP047984
Bacteroidota
Pontibacter russatus BT326 [CP047984]
1004373
1004447
+
Glu
TTC
-
¡û
>C241126897
CP047984
Bacteroidota
Pontibacter russatus BT326 [CP047984]
4281283
4281355
+
Glu
TTC
-
¡û
>W1710562170
FOOT01000006
Bacteroidota
Pontibacter chinhatensis [FOOT]
97727
97801
+
Glu
TTC
[ENA]
¡û
>W1710562171
FOOT01000006
Bacteroidota
Pontibacter chinhatensis [FOOT]
141332
141404
+
Glu
TTC
[ENA]
¡û
>W1710562178
FOOT01000013
Bacteroidota
Pontibacter chinhatensis [FOOT]
33247
33321
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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