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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39261 (35 seq.)
>W1710893534
LNEV01000018
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
240980
240891
-
Ser
CGA
[ENA]
¡û
>W1711074488
LSJO01000676
Alphaproteobacteria
Sphingomonas sp. CCH9-F2 [LSJO]
41577
41488
-
Ser
CGA
[ENA]
¡û
>W1711437766
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
546645
546734
+
Ser
CGA
[ENA]
¡û
>WENV170576219
FRDC01000151
[FRDC] freshwater metagenome; water
92601
92512
-
Ser
CGA
[ENA]
¡û
>WENV170576277
FRDC01000291
[FRDC] freshwater metagenome; water
19267
19356
+
Ser
CGA
[ENA]
¡û
>WENV170652763
JRYH01023034
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
351
440
+
Ser
CGA
[ENA]
¡û
>C181088935
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1520171
1520082
-
Ser
CGA
-
¡û
>C191144150
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
3761848
3761937
+
Ser
CGA
-
¡û
>W09133956
ACQU01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
76435
76524
+
Ser
CGA
[ENA]
¡û
>W1910182476
BJMX01000012
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
11766
11677
-
Ser
CGA
[ENA]
¡û
>C141008806
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1870769
1870858
+
Ser
CGA
[Ensembl]
¡û
>W1911653529
QDFX01000013
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
100849
100938
+
Ser
CGA
[ENA]
¡û
>W1810109409
PHHF01000070
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
54083
54172
+
Ser
CGA
[ENA]
¡û
>W2010096091
BJMX01000012
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
11766
11677
-
Ser
CGA
[ENA]
¡û
>W2011138439
NWVD01000001
Alphaproteobacteria
Sphingomonas ginsenosidimutans KACC 14949 [NWVD]
649203
649292
+
Ser
CGA
[ENA]
¡û
>W2011237088
QDFX01000013
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
100849
100938
+
Ser
CGA
[ENA]
¡û
>W2011667301
SPDV01000030
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
65131
65220
+
Ser
CGA
[ENA]
¡û
>W2012019958
VFOD01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4492 [VFOD]
1175773
1175862
+
Ser
CGA
[ENA]
¡û
>W2012020154
VFOG01000001
Alphaproteobacteria
Zymomonas mobilis DSM 14017 [VFOG]
707199
707110
-
Ser
CGA
[ENA]
¡û
>W2012196036
VWNA01000001
Alphaproteobacteria
Rhizobiales bacterium Sp-1 [VWNA]
2157613
2157702
+
Ser
CGA
[ENA]
¡û
>W2110276069
JACVVW010000007
Alphaproteobacteria
Acidiphilium multivorum LMS [JACVVW]
119358
119447
+
Ser
CGA
[ENA]
¡û
>W2110663360
JAHXZL010000016
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
17606
17517
-
Ser
CGA
[ENA]
¡û
>C211011751
AP023361
Alphaproteobacteria
Terrihabitans soli IZ6 [AP023361]
127603
127514
-
Ser
CGA
-
¡û
>C231047230
CP041716
Alphaproteobacteria
Acidiphilium multivorum JZ-6 [CP041716]
650166
650255
+
Ser
CGA
-
¡û
>C231508259
CP107052
Alphaproteobacteria
Acetobacteraceae bacterium (ex Diaphorina citri) [CP107052]
481282
481371
+
Ser
CGA
-
¡û
>C241365960
CP141588
Alphaproteobacteria
Sphingomonas sp. LY54 [CP141588]
1252581
1252492
-
Ser
CGA
-
¡û
>W1511390128
JSXI01000001
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
121966
121877
-
Ser
CGA
[ENA]
¡û
>C121015266
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1834207
1834296
+
Ser
CGA
[Ensembl]
¡û
>W1610040976
BANA01000281
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
12937
13026
+
Ser
CGA
[ENA]
¡û
>W1610074513
BCWT01000006
Alphaproteobacteria
Sphingomonas adhaesiva NBRC 15099 [BCWT]
31326
31237
-
Ser
CGA
[ENA]
¡û
>C131011853
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
2665180
2665269
+
Ser
CGA
[Ensembl]
¡û
>W1610753800
LNEV01000018
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
240980
240891
-
Ser
CGA
[ENA]
¡û
>W1610913793
LSJO01000676
Alphaproteobacteria
Sphingomonas sp. CCH9-F2 [LSJO]
41577
41488
-
Ser
CGA
[ENA]
¡û
>W1710038174
BANA01000281
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
12937
13026
+
Ser
CGA
[ENA]
¡û
>W1710071631
BCWT01000006
Alphaproteobacteria
Sphingomonas adhaesiva NBRC 15099 [BCWT]
31326
31237
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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