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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.395601 (53 seq.)
>W1711168264
LVXG01000023
Bacteroidota
Niastella yeongjuensis [LVXG]
921668
921594
-
Glu
TTC
[ENA]
¡û
>W1711168265
LVXG01000023
Bacteroidota
Niastella yeongjuensis [LVXG]
921470
921396
-
Glu
TTC
[ENA]
¡û
>W1711168529
LVYD01000042
Bacteroidota
Niastella vici [LVYD]
16596
16670
+
Glu
TTC
[ENA]
¡û
>W1711171915
LWBO01000012
Bacteroidota
Niastella koreensis [LWBO]
15130
15204
+
Glu
TTC
[ENA]
¡û
>W1711171916
LWBO01000012
Bacteroidota
Niastella koreensis [LWBO]
15325
15399
+
Glu
TTC
[ENA]
¡û
>WENV180025067
FTIL01063645
[FTIL] metagenome; soil
376
304
-
Glu
TTC
[ENA]
¡û
>WENV180692054
OCZS010328066
[OCZS] soil metagenome; soil
458
386
-
Glu
TTC
[ENA]
¡û
>WENV181402291
OFTY01000455
[OFTY] sludge metagenome; sludge
14693
14765
+
Glu
TTC
[ENA]
¡û
>WENV183745333
PJUL01026853
[PJUL] feces metagenome; Chicken feces enriched on filter paper
188
260
+
Glu
TTC
[ENA]
¡û
>WENV170980844
MWVT01003330
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
1703
1629
-
Glu
TTC
[ENA]
¡û
>WENV170984788
MWVW01000050
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
4455
4383
-
Glu
TTC
[ENA]
¡û
>WENV170985025
MWVW01011798
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
84
158
+
Glu
TTC
[ENA]
¡û
>WENV170985746
MWVX01001577
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
7018
6944
-
Glu
TTC
[ENA]
¡û
>WENV170985811
MWVX01003461
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
3865
3793
-
Glu
TTC
[ENA]
¡û
>WENV170986258
MWVX01024993
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1292
1218
-
Glu
TTC
[ENA]
¡û
>WENV170987666
MWVX01241484
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
527
453
-
Glu
TTC
[ENA]
¡û
>WENV170988011
MWVX01340423
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
373
445
+
Glu
TTC
[ENA]
¡û
>WENV170989205
MWVZ01003715
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
2004
1930
-
Glu
TTC
[ENA]
¡û
>WENV170990267
MWWA01000190
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
9380
9454
+
Glu
TTC
[ENA]
¡û
>WENV170990557
MWWA01017132
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
653
579
-
Glu
TTC
[ENA]
¡û
>WENV170992314
MWWB01015429
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
179
253
+
Glu
TTC
[ENA]
¡û
>WENV170993327
MWWB01265741
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
59
131
+
Glu
TTC
[ENA]
¡û
>WENV170993631
MWWB01379359
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
134
60
-
Glu
TTC
[ENA]
¡û
>WENV170994091
MWWD01011134
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
356
282
-
Glu
TTC
[ENA]
¡û
>WENV170994579
MWWE01009516
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1454
1528
+
Glu
TTC
[ENA]
¡û
>WENV170994971
MWWE01103276
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
428
354
-
Glu
TTC
[ENA]
¡û
>WENV170995089
MWWE01149328
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
105
31
-
Glu
TTC
[ENA]
¡û
>WENV170995283
MWWF01000041
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
8155
8081
-
Glu
TTC
[ENA]
¡û
>WENV170998041
MWWI01002272
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
224
150
-
Glu
TTC
[ENA]
¡û
>C191085395
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
4976386
4976458
+
Glu
TTC
-
¡û
>W2010544169
JAARML010000001
Bacteroidota
Pseudoflavitalea sp. X16 [JAARML]
2382257
2382185
-
Glu
TTC
[ENA]
¡û
>W2011368831
RBCI01000004
Bacteroidota
Flavisolibacter sp. X7X [RBCI]
6858
6930
+
Glu
TTC
[ENA]
¡û
>W2011578076
SGXA01000002
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
2591635
2591563
-
Glu
TTC
[ENA]
¡û
>W2011578077
SGXA01000002
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
2590079
2590007
-
Glu
TTC
[ENA]
¡û
>W2011624501
SLYK01000001
Bacteroidota
Niastella sp. CF465 [SLYK]
15056
15128
+
Glu
TTC
[ENA]
¡û
>W2011624502
SLYK01000001
Bacteroidota
Niastella sp. CF465 [SLYK]
15277
15349
+
Glu
TTC
[ENA]
¡û
>W2011694133
STFF01000008
Bacteroidota
Niastella sp. HX-16-21 [STFF]
340138
340066
-
Glu
TTC
[ENA]
¡û
>ENV09002981
ADGO01000497
Compost metagenome contig00001
735
661
-
Glu
TTC
[ENA]
¡û
>W2110493987
JAFFJX010000034
Bacteroidota
Pseudoflavitalea sp. SYSU D01084 [JAFFJX]
14025
14097
+
Glu
TTC
[ENA]
¡û
>W2110503700
JAFIQX010000003
Bacteroidota
Niastella sp. SYSU D00799 [JAFIQX]
711105
711033
-
Glu
TTC
[ENA]
¡û
>W2110546573
JAGHKO010000001
Bacteroidota
Niastella sp. MAH-29 [JAGHKO]
14603
14675
+
Glu
TTC
[ENA]
¡û
>W2110546574
JAGHKO010000001
Bacteroidota
Niastella sp. MAH-29 [JAGHKO]
14818
14890
+
Glu
TTC
[ENA]
¡û
>C231619811
CP119311
Bacteroidota
Pseudobacter sp. [CP119311]
16391
16463
+
Glu
TTC
-
¡û
>C241065878
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
514469
514541
+
Glu
TTC
-
¡û
>C241065879
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
516024
516096
+
Glu
TTC
-
¡û
>C241325430
CP135920
Bacteroidota
Paraflavitalea speifideaquila BL16E [CP135920]
7282167
7282239
+
Glu
TTC
-
¡û
>C241325431
CP135920
Bacteroidota
Paraflavitalea speifideaquila BL16E [CP135920]
7282375
7282447
+
Glu
TTC
-
¡û
>C121007515
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
6391623
6391697
+
Glu
TTC
[Ensembl]
¡û
>C121007516
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
6391818
6391892
+
Glu
TTC
[Ensembl]
¡û
>C161034897
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
1774580
1774506
-
Glu
TTC
[Ensembl]
¡û
>W1710547471
FOCZ01000002
Bacteroidota
Niastella yeongjuensis [FOCZ]
921990
921916
-
Glu
TTC
[ENA]
¡û
>W1710547472
FOCZ01000002
Bacteroidota
Niastella yeongjuensis [FOCZ]
921792
921718
-
Glu
TTC
[ENA]
¡û
>W1710583474
FQUU01000022
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
71611
71685
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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