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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.396055 (39 seq.)
>W1711090490
LTAU01000002
Bacillota
Lactiplantibacillus plantarum [LTAU]
261395
261469
+
Asn
GTT
[ENA]
¡û
>W1711133262
LUWR01000002
Bacillota
Lactiplantibacillus plantarum [LUWR]
446318
446392
+
Asn
GTT
[ENA]
¡û
>W1711134212
LUXG01000057
Bacillota
Lactiplantibacillus plantarum [LUXG]
66722
66796
+
Asn
GTT
[ENA]
¡û
>W1711134664
LUXO01000033
Bacillota
Lactiplantibacillus plantarum [LUXO]
871065
870991
-
Asn
GTT
[ENA]
¡û
>W1711461863
MJHI01000012
Bacillota
Lactiplantibacillus plantarum [MJHI]
41132
41058
-
Asn
GTT
[ENA]
¡û
>C171037493
CP015308
Bacillota
Lactiplantibacillus plantarum LY-78 [CP015308]
2970762
2970689
-
Asn
GTT
-
¡û
>WENV180444427
OBWZ01009872
[OBWZ] human gut metagenome; faeces
123
49
-
Asn
GTT
[ENA]
¢þ
>WENV180478019
OBZA01000011
[OBZA] human gut metagenome; faeces
45441
45515
+
Asn
GTT
[ENA]
¢þ
>W141086296
AUTE01000033
Bacillota
Lactiplantibacillus plantarum WJL [AUTE]
6893
6819
-
Asn
GTT
[ENA]
¡û
>W141096408
AVFI01000115
Bacillota
Lactiplantibacillus plantarum 2165 [AVFI]
10405
10331
-
Asn
GTT
[ENA]
¡û
>PHG181001927
KU052488
Siphoviridae
Lactobacillus phage SA-C12 (KU052488)
30814
30741
-
Asn
GTT
[ENA]
¡û
>C191001995
AP018405
Bacillota
Lactiplantibacillus plantarum SN35N [AP018405]
2665774
2665699
-
Asn
GTT
-
¡û
>C191037135
CP025690
Bacillota
Lactiplantibacillus plantarum IRG1 [CP025690]
50117
50043
-
Asn
GTT
-
¡û
>C191114489
CP033888
Bacillota
Lactiplantibacillus plantarum LMT1-48 [CP033888]
1167860
1167934
+
Asn
GTT
-
¡û
>C191134978
CP035113
Bacillota
Lactiplantibacillus plantarum SRCM103295 [CP035113]
2075527
2075600
+
Asn
GTT
-
¡û
>C191135706
CP035156
Bacillota
Lactiplantibacillus plantarum SRCM103362 [CP035156]
2086170
2086243
+
Asn
GTT
-
¡û
>C191136433
CP035174
Bacillota
Lactiplantibacillus plantarum SRCM103426 [CP035174]
2172949
2173022
+
Asn
GTT
-
¡û
>W1910751779
MKDA01000006
Bacillota
Lactiplantibacillus plantarum RI-191 [MKDA]
12811
12885
+
Asn
GTT
[ENA]
¡û
>W1910751856
MKDB01000004
Bacillota
Lactiplantibacillus plantarum RI-393 [MKDB]
100289
100215
-
Asn
GTT
[ENA]
¡û
>W1911708949
QPFU01000001
Bacillota
Lactiplantibacillus plantarum C29 [QPFU]
2226472
2226546
+
Asn
GTT
[ENA]
¡û
>W1911767497
QXEU01000029
Bacillota
Lactiplantibacillus plantarum TJA26B [QXEU]
20689
20763
+
Asn
GTT
[ENA]
¡û
>W1810357500
PVNW01000001
Bacillota
Lactiplantibacillus pentosus IG7 [PVNW]
32750
32676
-
Asn
GTT
[ENA]
¡û
>W1810452382
PZPN01000051
Bacillota
Lactiplantibacillus plantarum EBKLp545 [PZPN]
5870
5943
+
Asn
GTT
[ENA]
¡û
>W1810488853
QAZQ01000002
Bacillota
Lactiplantibacillus plantarum DS8_9 [QAZQ]
287503
287429
-
Asn
GTT
[ENA]
¡û
>W1810489004
QAZS01000008
Bacillota
Lactiplantibacillus plantarum DS13_9 [QAZS]
195836
195910
+
Asn
GTT
[ENA]
¡û
>W1810830016
QSLM01000021
Bacillota
Lactiplantibacillus plantarum AM25-25 [QSLM]
38678
38752
+
Asn
GTT
[ENA]
¡û
>W1510022585
CBZW010000004
Bacillota
Lactiplantibacillus plantarum 80 [CBZW]
149498
149572
+
Asn
GTT
[ENA]
¡û
>W1511297452
JPEB01000041
Bacillota
Lactiplantibacillus paraplantarum L-ZS9 [JPEB]
17904
17978
+
Asn
GTT
[ENA]
¡û
>W1610036971
AZFR01000178
Bacillota
Lactiplantibacillus argentoratensis subsp. argentoratensis DSM 16365 [AZFR]
38252
38178
-
Asn
GTT
[ENA]
¡û
>W1610586076
LDEL01000002
Bacillota
Lactiplantibacillus plantarum [LDEL]
447886
447960
+
Asn
GTT
[ENA]
¡û
>W1610924730
LTAU01000002
Bacillota
Lactiplantibacillus plantarum [LTAU]
261395
261469
+
Asn
GTT
[ENA]
¡û
>W1610944335
LUWR01000002
Bacillota
Lactiplantibacillus plantarum [LUWR]
446318
446392
+
Asn
GTT
[ENA]
¡û
>W1610945285
LUXG01000057
Bacillota
Lactiplantibacillus plantarum [LUXG]
66722
66796
+
Asn
GTT
[ENA]
¡û
>W1610945737
LUXO01000033
Bacillota
Lactiplantibacillus plantarum [LUXO]
871065
870991
-
Asn
GTT
[ENA]
¡û
>W1710034010
AZFR01000178
Bacillota
Lactiplantibacillus argentoratensis subsp. argentoratensis DSM 16365 [AZFR]
38252
38178
-
Asn
GTT
[ENA]
¡û
>W1710705356
LDEL01000002
Bacillota
Lactiplantibacillus plantarum [LDEL]
447886
447960
+
Asn
GTT
[ENA]
¡û
>W1710715395
LEAV01000033
Bacillota
Lactiplantibacillus plantarum [LEAV]
1693
1767
+
Asn
GTT
[ENA]
¡û
>W1710715576
LEAY01000014
Bacillota
Lactiplantibacillus plantarum [LEAY]
149639
149713
+
Asn
GTT
[ENA]
¡û
>W1710716681
LEBS01000065
Bacillota
Lactiplantibacillus plantarum [LEBS]
1472
1546
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK