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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.397242 (84 seq.)
>W1711129938
LUUM01000090
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
72618
72692
+
Gly
CCC
[ENA]
¡û
>W1711228869
LXWX01000122
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
36101
36175
+
Gly
CCC
[ENA]
¡û
>W131163853
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
916648
916574
-
Gly
CCC
[ENA]
¡û
>w015395
AAPC01000002
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
206159
206233
+
Gly
CCC
[ENA]
¡û
>WENV180292553
OBIV01505346
[OBIV] soil metagenome; Clay
103
29
-
Gly
CCC
[ENA]
¡û
>WENV180344365
OBLK01364809
[OBLK] soil metagenome; Clay
101
175
+
Gly
CCC
[ENA]
¡û
>WENV181167482
OEIU01034288
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1380
1454
+
Gly
CCC
[ENA]
¡û
>WENV181308000
OFIS01000092
[OFIS] sludge metagenome; sludge
109836
109762
-
Gly
CCC
[ENA]
¡û
>WENV181311949
OFJB01025298
[OFJB] sludge metagenome; sludge
1222
1148
-
Gly
CCC
[ENA]
¡û
>WENV181369731
OFQP01030709
[OFQP] freshwater metagenome; Freshwater Lake
229
303
+
Gly
CCC
[ENA]
¡û
>WENV181402179
OFTY01000193
[OFTY] sludge metagenome; sludge
4915
4989
+
Gly
CCC
[ENA]
¡û
>W141151370
AXBA01000005
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
208884
208958
+
Gly
CCC
[ENA]
¡û
>W141216022
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1885892
1885966
+
Gly
CCC
[ENA]
¡û
>C08011438
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
2568867
2568941
+
Gly
CCC
[Ensembl]
¡û
>W141278487
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
4361091
4361165
+
Gly
CCC
[ENA]
¡û
>WENV183636467
OOKD01004603
[OOKD] human gut metagenome; Skin biopsy
939
865
-
Gly
CCC
[ENA]
¡û
>WENV170000028
AERA01001633
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
9753
9679
-
Gly
CCC
[ENA]
¡û
>WENV170012066
APMI01116355
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
63
137
+
Gly
CCC
[ENA]
¡û
>WENV170012108
APMI01121074
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1353
1427
+
Gly
CCC
[ENA]
¡û
>WENV170553660
CXWK01026628
[CXWK] wastewater metagenome; activated sludge
2512
2586
+
Gly
CCC
[ENA]
¡û
>WENV170554223
CXWK01054639
[CXWK] wastewater metagenome; activated sludge
4536
4610
+
Gly
CCC
[ENA]
¡û
>WENV170566394
FKKE01022383
[FKKE] freshwater metagenome; freshwater
2743
2669
-
Gly
CCC
[ENA]
¡û
>WENV170652194
JRYH01000028
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
7560
7486
-
Gly
CCC
[ENA]
¡û
>WENV170652306
JRYH01000678
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
87694
87768
+
Gly
CCC
[ENA]
¡û
>WENV170655146
JTFN01007941
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2908
2834
-
Gly
CCC
[ENA]
¡û
>WENV170974891
MTKY01079957
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1342
1416
+
Gly
CCC
[ENA]
¡û
>C181089653
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1532513
1532439
-
Gly
CCC
-
¡û
>W141701385
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
191971
192045
+
Gly
CCC
[ENA]
¡û
>W141730047
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
758576
758650
+
Gly
CCC
[ENA]
¡û
>W141821188
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
212432
212506
+
Gly
CCC
[ENA]
¡û
>W1910236485
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
2129742
2129816
+
Gly
CCC
[ENA]
¡û
>W1910914027
NHSJ01000137
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
19673
19599
-
Gly
CCC
[ENA]
¡û
>W1911148307
NPET01000004
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
69037
69111
+
Gly
CCC
[ENA]
¡û
>W1911148370
NPEU01000183
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
4344
4270
-
Gly
CCC
[ENA]
¡û
>W1911148483
NPEW01000548
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
810
884
+
Gly
CCC
[ENA]
¡û
>W1911148514
NPEX01000159
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
9563
9637
+
Gly
CCC
[ENA]
¡û
>W1911219110
NRRJ01000014
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
69176
69250
+
Gly
CCC
[ENA]
¡û
>W1810330558
PUIV01000006
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
14038
14112
+
Gly
CCC
[ENA]
¡û
>C151104301
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
1717918
1717844
-
Gly
CCC
[Ensembl]
¡û
>C151104347
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
1717913
1717839
-
Gly
CCC
[Ensembl]
¡û
>W2010385713
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
2129742
2129816
+
Gly
CCC
[ENA]
¡û
>W2010722770
JACICC010000004
Alphaproteobacteria
Pseudochelatococcus contaminans DSM 28760 [JACICC]
428633
428707
+
Gly
CCC
[ENA]
¡û
>W2010727792
JACIGC010000002
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [JACIGC]
438520
438594
+
Gly
CCC
[ENA]
¡û
>W2010731206
JACIIW010000005
Alphaproteobacteria
Xanthobacter tagetidis DSM 11105 [JACIIW]
35329
35255
-
Gly
CCC
[ENA]
¡û
>W2010967048
NHSJ01000137
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
19673
19599
-
Gly
CCC
[ENA]
¡û
>W2011021238
NPET01000004
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
69037
69111
+
Gly
CCC
[ENA]
¡û
>W2011021301
NPEU01000183
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
4344
4270
-
Gly
CCC
[ENA]
¡û
>W2011021414
NPEW01000548
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
810
884
+
Gly
CCC
[ENA]
¡û
>W2011021445
NPEX01000159
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
9563
9637
+
Gly
CCC
[ENA]
¡û
>W2011063850
NRRJ01000014
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
69176
69250
+
Gly
CCC
[ENA]
¡û
>W2011402570
RCTF01000013
Alphaproteobacteria
Xanthobacter tagetidis ATCC 700314 [RCTF]
75398
75324
-
Gly
CCC
[ENA]
¡û
>W2011495191
RWKV01000001
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
341865
341791
-
Gly
CCC
[ENA]
¡û
>W2011654987
SOBM01000003
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
423244
423318
+
Gly
CCC
[ENA]
¡û
>W2011950398
UWOC01000137
Alphaproteobacteria
Rhodoplanes piscinae [UWOC]
135415
135489
+
Gly
CCC
[ENA]
¡û
>W2011963390
VAUP01000041
Alphaproteobacteria
Xanthobacter autotrophicus DSM 432 [VAUP]
36587
36513
-
Gly
CCC
[ENA]
¡û
>W2012061595
VJMF01000146
Alphaproteobacteria
Methylosinus sporium SM89A [VJMF]
1795
1721
-
Gly
CCC
[ENA]
¡û
>W2012144469
VTTL01000005
Alphaproteobacteria
Xanthobacter sp. 29k [VTTL]
279794
279868
+
Gly
CCC
[ENA]
¡û
>W2012196039
VWNA01000001
Alphaproteobacteria
Rhizobiales bacterium Sp-1 [VWNA]
2896685
2896759
+
Gly
CCC
[ENA]
¡û
>W2012398747
WNKS01000002
Alphaproteobacteria
Rhodoblastus acidophilus DSM 142 [WNKS]
303027
303101
+
Gly
CCC
[ENA]
¡û
>W2012398990
WNKV01000004
Alphaproteobacteria
Rhodoplanes serenus DSM 18633 [WNKV]
334866
334792
-
Gly
CCC
[ENA]
¡û
>W2012408115
WOVC01000013
Alphaproteobacteria
Methylosinus sp. RM1 [WOVC]
74757
74831
+
Gly
CCC
[ENA]
¡û
>W2110019339
BMCT01000006
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
142394
142320
-
Gly
CCC
[ENA]
¡û
>W2110023747
BMGG01000014
Alphaproteobacteria
Chelatococcus reniformis CGMCC 1.12919 [BMGG]
7543
7617
+
Gly
CCC
[ENA]
¡û
>W2110475547
JAFCMF010000001
Alphaproteobacteria
Bradyrhizobium sp. U87765 SZCCT0134 [JAFCMF]
1255595
1255669
+
Gly
CCC
[ENA]
¡û
>W2110475619
JAFCMG010000005
Alphaproteobacteria
Bradyrhizobium sp. U87765 SZCCT0131 [JAFCMG]
404567
404493
-
Gly
CCC
[ENA]
¡û
>W2110475710
JAFCMI010000005
Alphaproteobacteria
Bradyrhizobium sp. U87765 SZCCT0110 [JAFCMI]
404567
404493
-
Gly
CCC
[ENA]
¡û
>W2110475750
JAFCMJ010000005
Alphaproteobacteria
Bradyrhizobium sp. U87765 SZCCT0109 [JAFCMJ]
404567
404493
-
Gly
CCC
[ENA]
¡û
>W2110475897
JAFCMM010000003
Alphaproteobacteria
Bradyrhizobium sp. U87765 SZCCT0048 [JAFCMM]
662955
662881
-
Gly
CCC
[ENA]
¡û
>W2110540670
JAGGML010000001
Alphaproteobacteria
Xanthobacter flavus WS4821 [JAGGML]
1165758
1165832
+
Gly
CCC
[ENA]
¡û
>W2110617637
JAHLJF010000001
Alphaproteobacteria
Methylosinus sp. KRF6 [JAHLJF]
1068895
1068821
-
Gly
CCC
[ENA]
¡û
>C211176117
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
1030922
1030996
+
Gly
CCC
-
¡û
>C231037794
CP028908
Alphaproteobacteria
Bradyrhizobium sp. WD16 [CP028908]
2334531
2334605
+
Gly
CCC
-
¡û
>W2110752153
NHSK01000222
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NHSK]
10541
10467
-
Gly
CCC
[ENA]
¡û
>C241005262
AP022332
Alphaproteobacteria
Methylosinus sp. C49 [AP022332]
2869964
2869890
-
Gly
CCC
-
¡û
>C241088276
CP044331
Alphaproteobacteria
Methylocystis parvus BRCS2 [CP044331]
135260
135186
-
Gly
CCC
-
¡û
>C241237334
CP119869
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP119869]
1598741
1598815
+
Gly
CCC
-
¡û
>W2310021157
BSDO01000012
Alphaproteobacteria
Xanthobacter flavus 301 [BSDO]
18883
18957
+
Gly
CCC
[ENA]
¡û
>W2310021619
BSEC01000001
Alphaproteobacteria
Methylocystis echinoides LMG27198 [BSEC]
2954963
2954889
-
Gly
CCC
[ENA]
¡û
>WENV11100386
AERA01001633
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
9753
9679
-
Gly
CCC
[ENA]
¡û
>W121103209
AKZI01000030
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
46089
46163
+
Gly
CCC
[ENA]
¡û
>W1610941011
LUUM01000090
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
72618
72692
+
Gly
CCC
[ENA]
¡û
>W1611012786
LXWX01000122
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
36101
36175
+
Gly
CCC
[ENA]
¡û
>W1710524899
FNJC01000001
Alphaproteobacteria
Filomicrobium insigne [FNJC]
496913
496987
+
Gly
CCC
[ENA]
¡û
>W1710609871
FYDG01000012
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
69144
69218
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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